Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 TMA16-209ENST00000513272 803 ntTSL 2 BASIC19.43■□□□□ 0.7
CBX4O00257 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC19.43■□□□□ 0.7
CBX4O00257 P4HB-223ENST00000576390 439 ntTSL 4 BASIC19.43■□□□□ 0.7
CBX4O00257 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
CBX4O00257 AC116562.4-202ENST00000641738 218 ntBASIC19.43■□□□□ 0.7
CBX4O00257 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CBX4O00257 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CBX4O00257 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CBX4O00257 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC19.43■□□□□ 0.7
CBX4O00257 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC19.43■□□□□ 0.7
CBX4O00257 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
CBX4O00257 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CBX4O00257 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
CBX4O00257 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
CBX4O00257 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CBX4O00257 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
CBX4O00257 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC19.42■□□□□ 0.7
CBX4O00257 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CBX4O00257 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CBX4O00257 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CBX4O00257 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
CBX4O00257 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC19.42■□□□□ 0.7
CBX4O00257 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC19.42■□□□□ 0.7
CBX4O00257 AC141586.3-201ENST00000562166 1838 ntBASIC19.42■□□□□ 0.7
CBX4O00257 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
CBX4O00257 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CBX4O00257 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CBX4O00257 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CBX4O00257 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CBX4O00257 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
CBX4O00257 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
CBX4O00257 INGX-201ENST00000359239 846 ntBASIC19.42■□□□□ 0.7
CBX4O00257 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC19.42■□□□□ 0.7
CBX4O00257 ECEL1P2-202ENST00000465689 757 ntBASIC19.42■□□□□ 0.7
CBX4O00257 AC128688.1-201ENST00000487626 519 ntBASIC19.42■□□□□ 0.7
CBX4O00257 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CBX4O00257 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC19.42■□□□□ 0.7
CBX4O00257 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CBX4O00257 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CBX4O00257 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CBX4O00257 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
CBX4O00257 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC19.42■□□□□ 0.7
CBX4O00257 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CBX4O00257 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC19.41■□□□□ 0.7
CBX4O00257 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CBX4O00257 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CBX4O00257 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
CBX4O00257 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
CBX4O00257 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC19.41■□□□□ 0.7
CBX4O00257 AC005332.7-201ENST00000614046 2005 ntBASIC19.41■□□□□ 0.7
CBX4O00257 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CBX4O00257 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CBX4O00257 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC19.41■□□□□ 0.7
CBX4O00257 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CBX4O00257 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC19.41■□□□□ 0.7
CBX4O00257 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC19.41■□□□□ 0.7
CBX4O00257 CA15P1-201ENST00000481698 905 ntBASIC19.41■□□□□ 0.7
CBX4O00257 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC19.41■□□□□ 0.7
CBX4O00257 DUT-205ENST00000558813 769 ntTSL 2 BASIC19.41■□□□□ 0.7
CBX4O00257 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC19.41■□□□□ 0.7
CBX4O00257 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC19.41■□□□□ 0.7
CBX4O00257 CLN6-221ENST00000637494 765 ntTSL 5 BASIC19.41■□□□□ 0.7
CBX4O00257 AC120498.9-201ENST00000339021 3867 ntBASIC19.41■□□□□ 0.7
CBX4O00257 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CBX4O00257 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
CBX4O00257 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CBX4O00257 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CBX4O00257 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CBX4O00257 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CBX4O00257 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC19.41■□□□□ 0.7
CBX4O00257 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC19.41■□□□□ 0.7
CBX4O00257 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CBX4O00257 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC19.4■□□□□ 0.7
CBX4O00257 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CBX4O00257 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC19.4■□□□□ 0.7
CBX4O00257 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
CBX4O00257 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
CBX4O00257 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CBX4O00257 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC19.4■□□□□ 0.7
CBX4O00257 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CBX4O00257 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC19.4■□□□□ 0.7
CBX4O00257 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CBX4O00257 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CBX4O00257 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
CBX4O00257 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
CBX4O00257 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC19.4■□□□□ 0.7
CBX4O00257 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC19.4■□□□□ 0.7
CBX4O00257 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
CBX4O00257 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC19.4■□□□□ 0.7
CBX4O00257 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CBX4O00257 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC19.4■□□□□ 0.7
CBX4O00257 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CBX4O00257 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CBX4O00257 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC19.4■□□□□ 0.7
CBX4O00257 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC19.4■□□□□ 0.7
CBX4O00257 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CBX4O00257 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
CBX4O00257 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CBX4O00257 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CBX4O00257 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms