Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VCX3AQ9NNX9 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VCX3AQ9NNX9 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VCX3AQ9NNX9 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VCX3AQ9NNX9 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC17.78■□□□□ 0.44
VCX3AQ9NNX9 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VCX3AQ9NNX9 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC17.78■□□□□ 0.44
VCX3AQ9NNX9 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VCX3AQ9NNX9 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VCX3AQ9NNX9 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC17.78■□□□□ 0.44
VCX3AQ9NNX9 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VCX3AQ9NNX9 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
VCX3AQ9NNX9 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
VCX3AQ9NNX9 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VCX3AQ9NNX9 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC17.78■□□□□ 0.44
VCX3AQ9NNX9 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC17.78■□□□□ 0.44
VCX3AQ9NNX9 AC120498.10-201ENST00000621827 505 ntBASIC17.78■□□□□ 0.44
VCX3AQ9NNX9 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
VCX3AQ9NNX9 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VCX3AQ9NNX9 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
VCX3AQ9NNX9 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VCX3AQ9NNX9 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC17.78■□□□□ 0.44
VCX3AQ9NNX9 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
VCX3AQ9NNX9 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
VCX3AQ9NNX9 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC17.78■□□□□ 0.44
VCX3AQ9NNX9 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VCX3AQ9NNX9 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VCX3AQ9NNX9 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC17.78■□□□□ 0.44
VCX3AQ9NNX9 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC17.78■□□□□ 0.44
VCX3AQ9NNX9 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VCX3AQ9NNX9 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VCX3AQ9NNX9 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
VCX3AQ9NNX9 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
VCX3AQ9NNX9 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
VCX3AQ9NNX9 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VCX3AQ9NNX9 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
VCX3AQ9NNX9 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VCX3AQ9NNX9 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
VCX3AQ9NNX9 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VCX3AQ9NNX9 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VCX3AQ9NNX9 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC17.77■□□□□ 0.44
VCX3AQ9NNX9 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
VCX3AQ9NNX9 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC17.77■□□□□ 0.44
VCX3AQ9NNX9 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC17.77■□□□□ 0.44
VCX3AQ9NNX9 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VCX3AQ9NNX9 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
VCX3AQ9NNX9 AD000864.1-201ENST00000624076 2295 ntBASIC17.77■□□□□ 0.44
VCX3AQ9NNX9 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
VCX3AQ9NNX9 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC17.77■□□□□ 0.44
VCX3AQ9NNX9 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
VCX3AQ9NNX9 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC17.77■□□□□ 0.44
VCX3AQ9NNX9 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC17.77■□□□□ 0.44
VCX3AQ9NNX9 DUX4L19-201ENST00000557448 1267 ntBASIC17.77■□□□□ 0.44
VCX3AQ9NNX9 AC011298.3-201ENST00000615796 283 ntBASIC17.77■□□□□ 0.44
VCX3AQ9NNX9 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VCX3AQ9NNX9 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
VCX3AQ9NNX9 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
VCX3AQ9NNX9 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
VCX3AQ9NNX9 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
VCX3AQ9NNX9 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
VCX3AQ9NNX9 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.43
VCX3AQ9NNX9 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC17.77■□□□□ 0.43
VCX3AQ9NNX9 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
VCX3AQ9NNX9 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
VCX3AQ9NNX9 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC17.77■□□□□ 0.43
VCX3AQ9NNX9 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC17.77■□□□□ 0.43
VCX3AQ9NNX9 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
VCX3AQ9NNX9 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
VCX3AQ9NNX9 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
VCX3AQ9NNX9 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
VCX3AQ9NNX9 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
VCX3AQ9NNX9 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
VCX3AQ9NNX9 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC17.76■□□□□ 0.43
VCX3AQ9NNX9 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VCX3AQ9NNX9 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VCX3AQ9NNX9 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC17.76■□□□□ 0.43
VCX3AQ9NNX9 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VCX3AQ9NNX9 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
VCX3AQ9NNX9 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
VCX3AQ9NNX9 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC17.76■□□□□ 0.43
VCX3AQ9NNX9 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VCX3AQ9NNX9 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
VCX3AQ9NNX9 KRT16P6-202ENST00000425692 1426 ntBASIC17.76■□□□□ 0.43
VCX3AQ9NNX9 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VCX3AQ9NNX9 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC17.76■□□□□ 0.43
VCX3AQ9NNX9 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VCX3AQ9NNX9 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC17.76■□□□□ 0.43
VCX3AQ9NNX9 AL356740.2-201ENST00000601559 647 ntBASIC17.76■□□□□ 0.43
VCX3AQ9NNX9 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC17.76■□□□□ 0.43
VCX3AQ9NNX9 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC17.76■□□□□ 0.43
VCX3AQ9NNX9 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VCX3AQ9NNX9 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC17.76■□□□□ 0.43
VCX3AQ9NNX9 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
VCX3AQ9NNX9 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
VCX3AQ9NNX9 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VCX3AQ9NNX9 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VCX3AQ9NNX9 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC17.76■□□□□ 0.43
VCX3AQ9NNX9 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VCX3AQ9NNX9 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VCX3AQ9NNX9 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms