Protein–RNA interactions for Protein: Q99986

VRK1, Serine/threonine-protein kinase VRK1, humanhuman

Predicted RBP Predictions only

Length 396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1Q99986 BX088651.1-201ENST00000540551 451 ntBASIC16.79■□□□□ 0.28
VRK1Q99986 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC16.79■□□□□ 0.28
VRK1Q99986 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC16.79■□□□□ 0.28
VRK1Q99986 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
VRK1Q99986 AC073195.1-201ENST00000607241 877 ntBASIC16.79■□□□□ 0.28
VRK1Q99986 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VRK1Q99986 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
VRK1Q99986 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VRK1Q99986 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC16.79■□□□□ 0.28
VRK1Q99986 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
VRK1Q99986 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC16.79■□□□□ 0.28
VRK1Q99986 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VRK1Q99986 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
VRK1Q99986 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC16.79■□□□□ 0.28
VRK1Q99986 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC16.79■□□□□ 0.28
VRK1Q99986 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC16.79■□□□□ 0.28
VRK1Q99986 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
VRK1Q99986 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC16.79■□□□□ 0.28
VRK1Q99986 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
VRK1Q99986 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
VRK1Q99986 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
VRK1Q99986 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC16.79■□□□□ 0.28
VRK1Q99986 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VRK1Q99986 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC16.78■□□□□ 0.28
VRK1Q99986 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VRK1Q99986 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VRK1Q99986 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VRK1Q99986 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
VRK1Q99986 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VRK1Q99986 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VRK1Q99986 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VRK1Q99986 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VRK1Q99986 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
VRK1Q99986 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VRK1Q99986 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC16.78■□□□□ 0.28
VRK1Q99986 ECEL1P3-201ENST00000427961 737 ntBASIC16.78■□□□□ 0.28
VRK1Q99986 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC16.78■□□□□ 0.28
VRK1Q99986 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC16.78■□□□□ 0.28
VRK1Q99986 FDX2-207ENST00000494368 584 ntTSL 4 BASIC16.78■□□□□ 0.28
VRK1Q99986 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC16.78■□□□□ 0.28
VRK1Q99986 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC16.78■□□□□ 0.28
VRK1Q99986 AP003071.4-201ENST00000562276 1284 ntBASIC16.78■□□□□ 0.28
VRK1Q99986 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC16.78■□□□□ 0.28
VRK1Q99986 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC16.78■□□□□ 0.28
VRK1Q99986 DECR2-212ENST00000627716 352 ntTSL 2 BASIC16.78■□□□□ 0.28
VRK1Q99986 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VRK1Q99986 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VRK1Q99986 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
VRK1Q99986 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
VRK1Q99986 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VRK1Q99986 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VRK1Q99986 AC018553.1-201ENST00000616682 1458 ntBASIC16.78■□□□□ 0.28
VRK1Q99986 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VRK1Q99986 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VRK1Q99986 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VRK1Q99986 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VRK1Q99986 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
VRK1Q99986 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VRK1Q99986 STK25-204ENST00000405585 1643 ntTSL 2 BASIC16.78■□□□□ 0.28
VRK1Q99986 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC16.78■□□□□ 0.28
VRK1Q99986 TMEM179-206ENST00000616017 1645 ntBASIC16.78■□□□□ 0.28
VRK1Q99986 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VRK1Q99986 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC16.77■□□□□ 0.28
VRK1Q99986 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
VRK1Q99986 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VRK1Q99986 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
VRK1Q99986 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
VRK1Q99986 AC116351.2-201ENST00000606540 1585 ntBASIC16.77■□□□□ 0.28
VRK1Q99986 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
VRK1Q99986 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
VRK1Q99986 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC16.77■□□□□ 0.28
VRK1Q99986 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
VRK1Q99986 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VRK1Q99986 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VRK1Q99986 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VRK1Q99986 AC211429.1-201ENST00000415277 523 ntBASIC16.77■□□□□ 0.28
VRK1Q99986 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC16.77■□□□□ 0.28
VRK1Q99986 AL355075.4-201ENST00000554988 638 ntBASIC16.77■□□□□ 0.28
VRK1Q99986 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
VRK1Q99986 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC16.77■□□□□ 0.28
VRK1Q99986 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VRK1Q99986 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
VRK1Q99986 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
VRK1Q99986 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
VRK1Q99986 PHGDH-210ENST00000641115 1638 ntBASIC16.77■□□□□ 0.27
VRK1Q99986 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
VRK1Q99986 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.27
VRK1Q99986 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
VRK1Q99986 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC16.76■□□□□ 0.27
VRK1Q99986 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
VRK1Q99986 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC16.76■□□□□ 0.27
VRK1Q99986 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC16.76■□□□□ 0.27
VRK1Q99986 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC16.76■□□□□ 0.27
VRK1Q99986 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
VRK1Q99986 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC16.76■□□□□ 0.27
VRK1Q99986 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC16.76■□□□□ 0.27
VRK1Q99986 POLI-202ENST00000406285 2030 ntTSL 2 BASIC16.76■□□□□ 0.27
VRK1Q99986 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VRK1Q99986 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC16.76■□□□□ 0.27
VRK1Q99986 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms