Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 TOLLIP-AS1-201ENST00000530897 939 ntBASIC5.88□□□□□ -1.47
SYNE1Q8NF91 WWOX-216ENST00000569818 525 ntBASIC5.88□□□□□ -1.47
SYNE1Q8NF91 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 AC073314.1-201ENST00000568729 2216 ntBASIC5.88□□□□□ -1.47
SYNE1Q8NF91 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 AC007663.1-201ENST00000438948 1240 ntBASIC5.88□□□□□ -1.47
SYNE1Q8NF91 KRT18P38-201ENST00000449496 1282 ntBASIC5.88□□□□□ -1.47
SYNE1Q8NF91 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 KRT16P1-201ENST00000399124 1418 ntBASIC5.88□□□□□ -1.47
SYNE1Q8NF91 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 AL512408.1-201ENST00000569378 2000 ntBASIC5.88□□□□□ -1.47
SYNE1Q8NF91 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 FAM8A6P-201ENST00000407496 1135 ntBASIC5.88□□□□□ -1.47
SYNE1Q8NF91 PGM5P4-201ENST00000421970 445 ntBASIC5.88□□□□□ -1.47
SYNE1Q8NF91 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.47
SYNE1Q8NF91 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC5.87□□□□□ -1.47
SYNE1Q8NF91 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
SYNE1Q8NF91 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
SYNE1Q8NF91 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
SYNE1Q8NF91 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
SYNE1Q8NF91 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC5.87□□□□□ -1.47
SYNE1Q8NF91 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
SYNE1Q8NF91 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.47
SYNE1Q8NF91 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC5.87□□□□□ -1.47
SYNE1Q8NF91 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
SYNE1Q8NF91 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC5.87□□□□□ -1.47
SYNE1Q8NF91 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
SYNE1Q8NF91 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
SYNE1Q8NF91 AC063952.2-201ENST00000498792 1227 ntBASIC5.87□□□□□ -1.47
SYNE1Q8NF91 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC5.87□□□□□ -1.47
SYNE1Q8NF91 AC011558.1-201ENST00000623459 338 ntBASIC5.87□□□□□ -1.47
SYNE1Q8NF91 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
SYNE1Q8NF91 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC5.87□□□□□ -1.47
SYNE1Q8NF91 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
SYNE1Q8NF91 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC5.87□□□□□ -1.47
SYNE1Q8NF91 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
SYNE1Q8NF91 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
SYNE1Q8NF91 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
SYNE1Q8NF91 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC5.87□□□□□ -1.47
SYNE1Q8NF91 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC5.87□□□□□ -1.47
SYNE1Q8NF91 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC5.87□□□□□ -1.47
SYNE1Q8NF91 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC5.87□□□□□ -1.47
SYNE1Q8NF91 HIST1H2APS4-201ENST00000362070 348 ntBASIC5.87□□□□□ -1.47
SYNE1Q8NF91 UPK3BP1-201ENST00000428678 509 ntBASIC5.87□□□□□ -1.47
SYNE1Q8NF91 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
SYNE1Q8NF91 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC5.87□□□□□ -1.47
SYNE1Q8NF91 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
SYNE1Q8NF91 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
SYNE1Q8NF91 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC5.87□□□□□ -1.47
SYNE1Q8NF91 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC5.87□□□□□ -1.47
SYNE1Q8NF91 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
SYNE1Q8NF91 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC5.87□□□□□ -1.47
SYNE1Q8NF91 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC5.87□□□□□ -1.47
SYNE1Q8NF91 AC004951.3-201ENST00000418645 1148 ntBASIC5.87□□□□□ -1.47
SYNE1Q8NF91 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC5.87□□□□□ -1.47
SYNE1Q8NF91 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
SYNE1Q8NF91 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC5.87□□□□□ -1.47
SYNE1Q8NF91 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC5.87□□□□□ -1.47
SYNE1Q8NF91 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.47
SYNE1Q8NF91 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
SYNE1Q8NF91 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC5.87□□□□□ -1.47
SYNE1Q8NF91 RNF146-204ENST00000476956 884 ntTSL 2 BASIC5.87□□□□□ -1.47
SYNE1Q8NF91 AC022616.7-201ENST00000525383 220 ntBASIC5.87□□□□□ -1.47
SYNE1Q8NF91 CD81-212ENST00000526072 1172 ntTSL 5 BASIC5.87□□□□□ -1.47
SYNE1Q8NF91 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
SYNE1Q8NF91 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC5.87□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 64 ms