Protein–RNA interactions for Protein: Q6ZNA4

RNF111, E3 ubiquitin-protein ligase Arkadia, humanhuman

Predictions only

Length 994 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF111Q6ZNA4 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC18.52■□□□□ 0.56
RNF111Q6ZNA4 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
RNF111Q6ZNA4 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
RNF111Q6ZNA4 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC18.52■□□□□ 0.56
RNF111Q6ZNA4 POU5F1P3-201ENST00000428824 1078 ntBASIC18.52■□□□□ 0.56
RNF111Q6ZNA4 TSPY20P-201ENST00000450910 630 ntBASIC18.52■□□□□ 0.56
RNF111Q6ZNA4 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
RNF111Q6ZNA4 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC18.52■□□□□ 0.56
RNF111Q6ZNA4 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC18.52■□□□□ 0.56
RNF111Q6ZNA4 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC18.52■□□□□ 0.56
RNF111Q6ZNA4 AC008403.3-201ENST00000598924 454 ntBASIC18.52■□□□□ 0.56
RNF111Q6ZNA4 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC18.52■□□□□ 0.56
RNF111Q6ZNA4 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
RNF111Q6ZNA4 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC18.52■□□□□ 0.55
RNF111Q6ZNA4 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
RNF111Q6ZNA4 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
RNF111Q6ZNA4 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC18.52■□□□□ 0.55
RNF111Q6ZNA4 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
RNF111Q6ZNA4 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.55
RNF111Q6ZNA4 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC18.52■□□□□ 0.55
RNF111Q6ZNA4 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.55
RNF111Q6ZNA4 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC18.52■□□□□ 0.55
RNF111Q6ZNA4 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
RNF111Q6ZNA4 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
RNF111Q6ZNA4 AC139713.2-201ENST00000641328 2723 ntBASIC18.51■□□□□ 0.55
RNF111Q6ZNA4 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
RNF111Q6ZNA4 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
RNF111Q6ZNA4 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
RNF111Q6ZNA4 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC18.51■□□□□ 0.55
RNF111Q6ZNA4 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
RNF111Q6ZNA4 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC18.51■□□□□ 0.55
RNF111Q6ZNA4 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC18.51■□□□□ 0.55
RNF111Q6ZNA4 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
RNF111Q6ZNA4 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
RNF111Q6ZNA4 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
RNF111Q6ZNA4 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC18.51■□□□□ 0.55
RNF111Q6ZNA4 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
RNF111Q6ZNA4 KRT17P3-201ENST00000420566 1262 ntBASIC18.51■□□□□ 0.55
RNF111Q6ZNA4 POM121L13P-201ENST00000422362 380 ntBASIC18.51■□□□□ 0.55
RNF111Q6ZNA4 RPS2P52-201ENST00000469610 820 ntBASIC18.51■□□□□ 0.55
RNF111Q6ZNA4 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
RNF111Q6ZNA4 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC18.51■□□□□ 0.55
RNF111Q6ZNA4 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC18.51■□□□□ 0.55
RNF111Q6ZNA4 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
RNF111Q6ZNA4 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
RNF111Q6ZNA4 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
RNF111Q6ZNA4 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
RNF111Q6ZNA4 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
RNF111Q6ZNA4 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
RNF111Q6ZNA4 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
RNF111Q6ZNA4 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC18.51■□□□□ 0.55
RNF111Q6ZNA4 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
RNF111Q6ZNA4 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
RNF111Q6ZNA4 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC18.5■□□□□ 0.55
RNF111Q6ZNA4 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
RNF111Q6ZNA4 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
RNF111Q6ZNA4 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC18.5■□□□□ 0.55
RNF111Q6ZNA4 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
RNF111Q6ZNA4 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
RNF111Q6ZNA4 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
RNF111Q6ZNA4 ADM-205ENST00000528544 586 ntTSL 2 BASIC18.5■□□□□ 0.55
RNF111Q6ZNA4 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC18.5■□□□□ 0.55
RNF111Q6ZNA4 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC18.5■□□□□ 0.55
RNF111Q6ZNA4 KLF2-202ENST00000592003 564 ntTSL 3 BASIC18.5■□□□□ 0.55
RNF111Q6ZNA4 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
RNF111Q6ZNA4 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
RNF111Q6ZNA4 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC18.5■□□□□ 0.55
RNF111Q6ZNA4 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC18.5■□□□□ 0.55
RNF111Q6ZNA4 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC18.5■□□□□ 0.55
RNF111Q6ZNA4 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
RNF111Q6ZNA4 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
RNF111Q6ZNA4 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
RNF111Q6ZNA4 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
RNF111Q6ZNA4 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
RNF111Q6ZNA4 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RNF111Q6ZNA4 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC18.49■□□□□ 0.55
RNF111Q6ZNA4 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC18.49■□□□□ 0.55
RNF111Q6ZNA4 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
RNF111Q6ZNA4 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RNF111Q6ZNA4 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
RNF111Q6ZNA4 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
RNF111Q6ZNA4 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
RNF111Q6ZNA4 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
RNF111Q6ZNA4 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC18.49■□□□□ 0.55
RNF111Q6ZNA4 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC18.49■□□□□ 0.55
RNF111Q6ZNA4 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
RNF111Q6ZNA4 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
RNF111Q6ZNA4 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC18.49■□□□□ 0.55
RNF111Q6ZNA4 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
RNF111Q6ZNA4 AC006058.3-201ENST00000606217 1069 ntBASIC18.49■□□□□ 0.55
RNF111Q6ZNA4 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
RNF111Q6ZNA4 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
RNF111Q6ZNA4 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC18.49■□□□□ 0.55
RNF111Q6ZNA4 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RNF111Q6ZNA4 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RNF111Q6ZNA4 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
RNF111Q6ZNA4 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RNF111Q6ZNA4 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
RNF111Q6ZNA4 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RNF111Q6ZNA4 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms