Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC17.04■□□□□ 0.32
CCDC58Q4VC31 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC17.03■□□□□ 0.32
CCDC58Q4VC31 AC009053.2-201ENST00000563701 2365 ntBASIC17.03■□□□□ 0.32
CCDC58Q4VC31 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC17.03■□□□□ 0.32
CCDC58Q4VC31 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC17.03■□□□□ 0.32
CCDC58Q4VC31 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC58Q4VC31 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC17.03■□□□□ 0.32
CCDC58Q4VC31 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC17.03■□□□□ 0.32
CCDC58Q4VC31 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC17.03■□□□□ 0.32
CCDC58Q4VC31 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC58Q4VC31 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC58Q4VC31 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC17.03■□□□□ 0.32
CCDC58Q4VC31 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC17.03■□□□□ 0.32
CCDC58Q4VC31 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC58Q4VC31 HACD1-201ENST00000326961 773 ntTSL 2 BASIC17.03■□□□□ 0.32
CCDC58Q4VC31 AL512625.2-201ENST00000417533 625 ntBASIC17.03■□□□□ 0.32
CCDC58Q4VC31 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC17.03■□□□□ 0.32
CCDC58Q4VC31 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC17.03■□□□□ 0.32
CCDC58Q4VC31 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC58Q4VC31 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC58Q4VC31 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC58Q4VC31 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC17.03■□□□□ 0.32
CCDC58Q4VC31 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC17.03■□□□□ 0.32
CCDC58Q4VC31 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC58Q4VC31 AC231657.2-201ENST00000624556 255 ntBASIC17.03■□□□□ 0.32
CCDC58Q4VC31 PARP1-210ENST00000629232 477 ntTSL 5 BASIC17.03■□□□□ 0.32
CCDC58Q4VC31 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC58Q4VC31 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC58Q4VC31 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC58Q4VC31 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC58Q4VC31 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC17.03■□□□□ 0.32
CCDC58Q4VC31 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
CCDC58Q4VC31 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC17.03■□□□□ 0.32
CCDC58Q4VC31 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC58Q4VC31 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC58Q4VC31 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC58Q4VC31 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC58Q4VC31 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC58Q4VC31 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC58Q4VC31 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC58Q4VC31 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC58Q4VC31 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC58Q4VC31 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC17.02■□□□□ 0.32
CCDC58Q4VC31 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC58Q4VC31 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC17.02■□□□□ 0.32
CCDC58Q4VC31 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC58Q4VC31 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC17.02■□□□□ 0.32
CCDC58Q4VC31 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
CCDC58Q4VC31 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
CCDC58Q4VC31 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC17.02■□□□□ 0.32
CCDC58Q4VC31 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC58Q4VC31 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC58Q4VC31 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC58Q4VC31 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC58Q4VC31 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC58Q4VC31 BID-214ENST00000617586 542 ntTSL 5 BASIC17.02■□□□□ 0.32
CCDC58Q4VC31 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC17.02■□□□□ 0.31
CCDC58Q4VC31 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CCDC58Q4VC31 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
CCDC58Q4VC31 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC17.02■□□□□ 0.31
CCDC58Q4VC31 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
CCDC58Q4VC31 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CCDC58Q4VC31 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC17.02■□□□□ 0.31
CCDC58Q4VC31 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CCDC58Q4VC31 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CCDC58Q4VC31 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CCDC58Q4VC31 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC17.02■□□□□ 0.31
CCDC58Q4VC31 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CCDC58Q4VC31 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC58Q4VC31 USP49-202ENST00000373010 2446 ntTSL 5 BASIC17.01■□□□□ 0.31
CCDC58Q4VC31 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC58Q4VC31 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC58Q4VC31 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC17.01■□□□□ 0.31
CCDC58Q4VC31 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC58Q4VC31 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC58Q4VC31 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
CCDC58Q4VC31 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC58Q4VC31 AC016769.1-201ENST00000409132 1010 ntBASIC17.01■□□□□ 0.31
CCDC58Q4VC31 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC17.01■□□□□ 0.31
CCDC58Q4VC31 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC17.01■□□□□ 0.31
CCDC58Q4VC31 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC17.01■□□□□ 0.31
CCDC58Q4VC31 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC58Q4VC31 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC17.01■□□□□ 0.31
CCDC58Q4VC31 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC17.01■□□□□ 0.31
CCDC58Q4VC31 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC58Q4VC31 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC17.01■□□□□ 0.31
CCDC58Q4VC31 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC17.01■□□□□ 0.31
CCDC58Q4VC31 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC58Q4VC31 WIZP1-201ENST00000531444 2299 ntBASIC17.01■□□□□ 0.31
CCDC58Q4VC31 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC17.01■□□□□ 0.31
CCDC58Q4VC31 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC58Q4VC31 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC58Q4VC31 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC58Q4VC31 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC58Q4VC31 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC58Q4VC31 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC58Q4VC31 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC58Q4VC31 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC58Q4VC31 IRX1P1-201ENST00000438849 1838 ntBASIC17■□□□□ 0.31
CCDC58Q4VC31 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC17■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms