Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC18.31■□□□□ 0.52
COL28A1Q2UY09 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL28A1Q2UY09 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL28A1Q2UY09 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC18.31■□□□□ 0.52
COL28A1Q2UY09 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL28A1Q2UY09 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC18.31■□□□□ 0.52
COL28A1Q2UY09 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL28A1Q2UY09 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL28A1Q2UY09 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL28A1Q2UY09 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL28A1Q2UY09 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL28A1Q2UY09 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
COL28A1Q2UY09 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC18.31■□□□□ 0.52
COL28A1Q2UY09 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
COL28A1Q2UY09 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL28A1Q2UY09 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL28A1Q2UY09 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL28A1Q2UY09 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC18.31■□□□□ 0.52
COL28A1Q2UY09 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL28A1Q2UY09 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC18.3■□□□□ 0.52
COL28A1Q2UY09 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC18.3■□□□□ 0.52
COL28A1Q2UY09 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL28A1Q2UY09 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
COL28A1Q2UY09 MCC-208ENST00000514701 2855 ntTSL 2 BASIC18.3■□□□□ 0.52
COL28A1Q2UY09 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL28A1Q2UY09 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL28A1Q2UY09 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL28A1Q2UY09 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL28A1Q2UY09 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL28A1Q2UY09 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL28A1Q2UY09 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL28A1Q2UY09 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC18.3■□□□□ 0.52
COL28A1Q2UY09 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC18.3■□□□□ 0.52
COL28A1Q2UY09 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC18.3■□□□□ 0.52
COL28A1Q2UY09 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL28A1Q2UY09 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC18.3■□□□□ 0.52
COL28A1Q2UY09 SNX5-210ENST00000481323 562 ntTSL 3 BASIC18.3■□□□□ 0.52
COL28A1Q2UY09 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC18.3■□□□□ 0.52
COL28A1Q2UY09 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
COL28A1Q2UY09 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL28A1Q2UY09 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL28A1Q2UY09 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL28A1Q2UY09 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC18.3■□□□□ 0.52
COL28A1Q2UY09 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL28A1Q2UY09 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
COL28A1Q2UY09 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL28A1Q2UY09 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL28A1Q2UY09 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL28A1Q2UY09 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC18.29■□□□□ 0.52
COL28A1Q2UY09 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
COL28A1Q2UY09 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC18.29■□□□□ 0.52
COL28A1Q2UY09 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC18.29■□□□□ 0.52
COL28A1Q2UY09 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL28A1Q2UY09 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
COL28A1Q2UY09 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL28A1Q2UY09 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
COL28A1Q2UY09 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL28A1Q2UY09 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL28A1Q2UY09 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL28A1Q2UY09 GXYLT1P6-201ENST00000456472 1187 ntBASIC18.29■□□□□ 0.52
COL28A1Q2UY09 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC18.29■□□□□ 0.52
COL28A1Q2UY09 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC18.29■□□□□ 0.52
COL28A1Q2UY09 AC092329.2-201ENST00000598402 547 ntBASIC18.29■□□□□ 0.52
COL28A1Q2UY09 DFFB-212ENST00000625756 649 ntTSL 5 BASIC18.29■□□□□ 0.52
COL28A1Q2UY09 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL28A1Q2UY09 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL28A1Q2UY09 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC18.29■□□□□ 0.52
COL28A1Q2UY09 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL28A1Q2UY09 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL28A1Q2UY09 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC18.29■□□□□ 0.52
COL28A1Q2UY09 KRT8P17-201ENST00000453110 1448 ntBASIC18.29■□□□□ 0.52
COL28A1Q2UY09 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC18.29■□□□□ 0.52
COL28A1Q2UY09 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC18.29■□□□□ 0.52
COL28A1Q2UY09 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL28A1Q2UY09 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL28A1Q2UY09 RCC2P6-201ENST00000526625 1557 ntBASIC18.29■□□□□ 0.52
COL28A1Q2UY09 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC18.29■□□□□ 0.52
COL28A1Q2UY09 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL28A1Q2UY09 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC18.29■□□□□ 0.52
COL28A1Q2UY09 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC18.29■□□□□ 0.52
COL28A1Q2UY09 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL28A1Q2UY09 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL28A1Q2UY09 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC18.28■□□□□ 0.52
COL28A1Q2UY09 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
COL28A1Q2UY09 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL28A1Q2UY09 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL28A1Q2UY09 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL28A1Q2UY09 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC18.28■□□□□ 0.52
COL28A1Q2UY09 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC18.28■□□□□ 0.52
COL28A1Q2UY09 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL28A1Q2UY09 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC18.28■□□□□ 0.52
COL28A1Q2UY09 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
COL28A1Q2UY09 AC008040.2-201ENST00000461049 708 ntBASIC18.28■□□□□ 0.52
COL28A1Q2UY09 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC18.28■□□□□ 0.52
COL28A1Q2UY09 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC18.28■□□□□ 0.52
COL28A1Q2UY09 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
COL28A1Q2UY09 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL28A1Q2UY09 KRT8P20-201ENST00000423953 1409 ntBASIC18.28■□□□□ 0.52
COL28A1Q2UY09 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC18.28■□□□□ 0.52
COL28A1Q2UY09 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms