Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SLC28A1O00337 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SLC28A1O00337 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
SLC28A1O00337 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SLC28A1O00337 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC18.38■□□□□ 0.53
SLC28A1O00337 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC18.38■□□□□ 0.53
SLC28A1O00337 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SLC28A1O00337 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SLC28A1O00337 AL512353.2-201ENST00000448759 1962 ntBASIC18.37■□□□□ 0.53
SLC28A1O00337 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SLC28A1O00337 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
SLC28A1O00337 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SLC28A1O00337 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SLC28A1O00337 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SLC28A1O00337 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC18.37■□□□□ 0.53
SLC28A1O00337 C1QL1P1-201ENST00000568105 661 ntBASIC18.37■□□□□ 0.53
SLC28A1O00337 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC18.37■□□□□ 0.53
SLC28A1O00337 AC083906.6-201ENST00000641366 219 ntBASIC18.37■□□□□ 0.53
SLC28A1O00337 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
SLC28A1O00337 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SLC28A1O00337 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
SLC28A1O00337 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SLC28A1O00337 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SLC28A1O00337 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SLC28A1O00337 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SLC28A1O00337 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC18.37■□□□□ 0.53
SLC28A1O00337 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SLC28A1O00337 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
SLC28A1O00337 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
SLC28A1O00337 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SLC28A1O00337 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SLC28A1O00337 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SLC28A1O00337 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SLC28A1O00337 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SLC28A1O00337 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
SLC28A1O00337 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SLC28A1O00337 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SLC28A1O00337 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC18.36■□□□□ 0.53
SLC28A1O00337 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SLC28A1O00337 AC090192.1-201ENST00000517740 490 ntBASIC18.36■□□□□ 0.53
SLC28A1O00337 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SLC28A1O00337 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC18.36■□□□□ 0.53
SLC28A1O00337 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC18.36■□□□□ 0.53
SLC28A1O00337 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SLC28A1O00337 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
SLC28A1O00337 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC18.36■□□□□ 0.53
SLC28A1O00337 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
SLC28A1O00337 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC18.36■□□□□ 0.53
SLC28A1O00337 HLA-A-209ENST00000638375 975 ntBASIC18.36■□□□□ 0.53
SLC28A1O00337 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SLC28A1O00337 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
SLC28A1O00337 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SLC28A1O00337 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC18.35■□□□□ 0.53
SLC28A1O00337 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC18.35■□□□□ 0.53
SLC28A1O00337 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC18.35■□□□□ 0.53
SLC28A1O00337 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SLC28A1O00337 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
SLC28A1O00337 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC18.35■□□□□ 0.53
SLC28A1O00337 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
SLC28A1O00337 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC18.35■□□□□ 0.53
SLC28A1O00337 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SLC28A1O00337 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
SLC28A1O00337 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
SLC28A1O00337 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SLC28A1O00337 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SLC28A1O00337 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SLC28A1O00337 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SLC28A1O00337 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC18.35■□□□□ 0.53
SLC28A1O00337 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC18.35■□□□□ 0.53
SLC28A1O00337 KRT17P3-201ENST00000420566 1262 ntBASIC18.35■□□□□ 0.53
SLC28A1O00337 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
SLC28A1O00337 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SLC28A1O00337 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SLC28A1O00337 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SLC28A1O00337 AC008403.3-201ENST00000598924 454 ntBASIC18.35■□□□□ 0.53
SLC28A1O00337 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC18.35■□□□□ 0.53
SLC28A1O00337 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC18.35■□□□□ 0.53
SLC28A1O00337 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC18.35■□□□□ 0.53
SLC28A1O00337 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SLC28A1O00337 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC18.35■□□□□ 0.53
SLC28A1O00337 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SLC28A1O00337 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SLC28A1O00337 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SLC28A1O00337 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC18.35■□□□□ 0.53
SLC28A1O00337 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
SLC28A1O00337 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
SLC28A1O00337 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SLC28A1O00337 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SLC28A1O00337 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SLC28A1O00337 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SLC28A1O00337 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC18.34■□□□□ 0.53
SLC28A1O00337 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SLC28A1O00337 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SLC28A1O00337 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SLC28A1O00337 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SLC28A1O00337 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SLC28A1O00337 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
SLC28A1O00337 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC18.34■□□□□ 0.53
SLC28A1O00337 GAS7-202ENST00000396115 929 ntTSL 5 BASIC18.34■□□□□ 0.53
SLC28A1O00337 AL355802.2-201ENST00000402069 882 ntBASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms