Protein–RNA interactions for Protein: A0A5B6

TCRBV3S1, T-cell receptor beta variable 28 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV3S1A0A5B6 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TCRBV3S1A0A5B6 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC17.88■□□□□ 0.45
TCRBV3S1A0A5B6 KRT8P8-201ENST00000434750 1448 ntBASIC17.88■□□□□ 0.45
TCRBV3S1A0A5B6 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
TCRBV3S1A0A5B6 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
TCRBV3S1A0A5B6 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TCRBV3S1A0A5B6 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
TCRBV3S1A0A5B6 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC17.87■□□□□ 0.45
TCRBV3S1A0A5B6 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TCRBV3S1A0A5B6 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
TCRBV3S1A0A5B6 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TCRBV3S1A0A5B6 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC17.87■□□□□ 0.45
TCRBV3S1A0A5B6 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
TCRBV3S1A0A5B6 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC17.87■□□□□ 0.45
TCRBV3S1A0A5B6 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
TCRBV3S1A0A5B6 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
TCRBV3S1A0A5B6 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC17.87■□□□□ 0.45
TCRBV3S1A0A5B6 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TCRBV3S1A0A5B6 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
TCRBV3S1A0A5B6 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
TCRBV3S1A0A5B6 CNN2P6-201ENST00000439038 900 ntBASIC17.87■□□□□ 0.45
TCRBV3S1A0A5B6 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC17.87■□□□□ 0.45
TCRBV3S1A0A5B6 HES2-205ENST00000487437 968 ntTSL 3 BASIC17.87■□□□□ 0.45
TCRBV3S1A0A5B6 AL139246.5-201ENST00000606645 996 ntBASIC17.87■□□□□ 0.45
TCRBV3S1A0A5B6 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
TCRBV3S1A0A5B6 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TCRBV3S1A0A5B6 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TCRBV3S1A0A5B6 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TCRBV3S1A0A5B6 NXN-202ENST00000537628 1340 ntTSL 3 BASIC17.87■□□□□ 0.45
TCRBV3S1A0A5B6 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TCRBV3S1A0A5B6 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
TCRBV3S1A0A5B6 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC17.87■□□□□ 0.45
TCRBV3S1A0A5B6 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC17.87■□□□□ 0.45
TCRBV3S1A0A5B6 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC17.87■□□□□ 0.45
TCRBV3S1A0A5B6 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
TCRBV3S1A0A5B6 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC17.87■□□□□ 0.45
TCRBV3S1A0A5B6 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC17.87■□□□□ 0.45
TCRBV3S1A0A5B6 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC17.87■□□□□ 0.45
TCRBV3S1A0A5B6 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TCRBV3S1A0A5B6 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TCRBV3S1A0A5B6 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.86■□□□□ 0.45
TCRBV3S1A0A5B6 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC17.86■□□□□ 0.45
TCRBV3S1A0A5B6 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
TCRBV3S1A0A5B6 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC17.86■□□□□ 0.45
TCRBV3S1A0A5B6 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TCRBV3S1A0A5B6 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC17.86■□□□□ 0.45
TCRBV3S1A0A5B6 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TCRBV3S1A0A5B6 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TCRBV3S1A0A5B6 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TCRBV3S1A0A5B6 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TCRBV3S1A0A5B6 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC17.86■□□□□ 0.45
TCRBV3S1A0A5B6 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC17.86■□□□□ 0.45
TCRBV3S1A0A5B6 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
TCRBV3S1A0A5B6 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TCRBV3S1A0A5B6 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
TCRBV3S1A0A5B6 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TCRBV3S1A0A5B6 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TCRBV3S1A0A5B6 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
TCRBV3S1A0A5B6 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TCRBV3S1A0A5B6 GOLGA6L3-201ENST00000507199 1679 ntBASIC17.86■□□□□ 0.45
TCRBV3S1A0A5B6 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC17.86■□□□□ 0.45
TCRBV3S1A0A5B6 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TCRBV3S1A0A5B6 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
TCRBV3S1A0A5B6 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TCRBV3S1A0A5B6 SNAI3-AS1-205ENST00000568633 2096 ntBASIC17.86■□□□□ 0.45
TCRBV3S1A0A5B6 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
TCRBV3S1A0A5B6 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
TCRBV3S1A0A5B6 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
TCRBV3S1A0A5B6 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
TCRBV3S1A0A5B6 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TCRBV3S1A0A5B6 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TCRBV3S1A0A5B6 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC17.85■□□□□ 0.45
TCRBV3S1A0A5B6 GNAS-203ENST00000306120 1878 ntBASIC17.85■□□□□ 0.45
TCRBV3S1A0A5B6 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
TCRBV3S1A0A5B6 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
TCRBV3S1A0A5B6 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TCRBV3S1A0A5B6 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TCRBV3S1A0A5B6 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TCRBV3S1A0A5B6 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TCRBV3S1A0A5B6 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
TCRBV3S1A0A5B6 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TCRBV3S1A0A5B6 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
TCRBV3S1A0A5B6 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TCRBV3S1A0A5B6 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC17.85■□□□□ 0.45
TCRBV3S1A0A5B6 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
TCRBV3S1A0A5B6 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TCRBV3S1A0A5B6 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
TCRBV3S1A0A5B6 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TCRBV3S1A0A5B6 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
TCRBV3S1A0A5B6 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TCRBV3S1A0A5B6 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
TCRBV3S1A0A5B6 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TCRBV3S1A0A5B6 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC17.84■□□□□ 0.45
TCRBV3S1A0A5B6 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
TCRBV3S1A0A5B6 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC17.84■□□□□ 0.45
TCRBV3S1A0A5B6 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
TCRBV3S1A0A5B6 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC17.84■□□□□ 0.45
TCRBV3S1A0A5B6 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TCRBV3S1A0A5B6 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TCRBV3S1A0A5B6 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms