Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC17.99■□□□□ 0.47
SOX3P41225 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SOX3P41225 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC17.99■□□□□ 0.47
SOX3P41225 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
SOX3P41225 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SOX3P41225 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SOX3P41225 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC17.98■□□□□ 0.47
SOX3P41225 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SOX3P41225 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC17.98■□□□□ 0.47
SOX3P41225 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SOX3P41225 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SOX3P41225 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
SOX3P41225 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SOX3P41225 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SOX3P41225 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SOX3P41225 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SOX3P41225 AL355355.2-201ENST00000442321 338 ntBASIC17.98■□□□□ 0.47
SOX3P41225 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SOX3P41225 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
SOX3P41225 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
SOX3P41225 PWWP2AP1-201ENST00000429776 2273 ntBASIC17.98■□□□□ 0.47
SOX3P41225 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SOX3P41225 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SOX3P41225 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC17.98■□□□□ 0.47
SOX3P41225 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SOX3P41225 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SOX3P41225 KRT16P1-201ENST00000399124 1418 ntBASIC17.98■□□□□ 0.47
SOX3P41225 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
SOX3P41225 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC17.97■□□□□ 0.47
SOX3P41225 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
SOX3P41225 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
SOX3P41225 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
SOX3P41225 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SOX3P41225 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SOX3P41225 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
SOX3P41225 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC17.97■□□□□ 0.47
SOX3P41225 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
SOX3P41225 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC17.97■□□□□ 0.47
SOX3P41225 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC17.97■□□□□ 0.47
SOX3P41225 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC17.97■□□□□ 0.47
SOX3P41225 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
SOX3P41225 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC17.97■□□□□ 0.47
SOX3P41225 AP003071.4-201ENST00000562276 1284 ntBASIC17.97■□□□□ 0.47
SOX3P41225 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC17.97■□□□□ 0.47
SOX3P41225 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC17.97■□□□□ 0.47
SOX3P41225 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
SOX3P41225 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
SOX3P41225 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC17.97■□□□□ 0.47
SOX3P41225 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC17.97■□□□□ 0.47
SOX3P41225 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
SOX3P41225 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
SOX3P41225 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SOX3P41225 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC17.97■□□□□ 0.47
SOX3P41225 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SOX3P41225 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SOX3P41225 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SOX3P41225 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
SOX3P41225 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
SOX3P41225 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SOX3P41225 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
SOX3P41225 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SOX3P41225 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SOX3P41225 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC17.96■□□□□ 0.47
SOX3P41225 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
SOX3P41225 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC17.96■□□□□ 0.47
SOX3P41225 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC17.96■□□□□ 0.47
SOX3P41225 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC17.96■□□□□ 0.47
SOX3P41225 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
SOX3P41225 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SOX3P41225 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SOX3P41225 KRT8P8-201ENST00000434750 1448 ntBASIC17.96■□□□□ 0.47
SOX3P41225 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SOX3P41225 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
SOX3P41225 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.46
SOX3P41225 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC17.95■□□□□ 0.46
SOX3P41225 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
SOX3P41225 PTGES2-AS1-201ENST00000443493 2100 ntBASIC17.95■□□□□ 0.46
SOX3P41225 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
SOX3P41225 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SOX3P41225 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SOX3P41225 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SOX3P41225 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SOX3P41225 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SOX3P41225 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SOX3P41225 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC17.95■□□□□ 0.46
SOX3P41225 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SOX3P41225 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SOX3P41225 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SOX3P41225 AL355075.4-201ENST00000554988 638 ntBASIC17.95■□□□□ 0.46
SOX3P41225 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC17.95■□□□□ 0.46
SOX3P41225 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC17.95■□□□□ 0.46
SOX3P41225 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC17.95■□□□□ 0.46
SOX3P41225 AL445675.2-201ENST00000620291 557 ntBASIC17.95■□□□□ 0.46
SOX3P41225 DECR2-212ENST00000627716 352 ntTSL 2 BASIC17.95■□□□□ 0.46
SOX3P41225 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC17.95■□□□□ 0.46
SOX3P41225 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SOX3P41225 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SOX3P41225 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
SOX3P41225 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SOX3P41225 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms