Protein–RNA interactions for Protein: X5D2U9

HLA-DRB4, HLA class II histocompatibility antigen, DR beta 4 chain, humanhuman

Predictions only

Length 266 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DRB4X5D2U9 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HLA-DRB4X5D2U9 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
HLA-DRB4X5D2U9 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HLA-DRB4X5D2U9 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HLA-DRB4X5D2U9 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HLA-DRB4X5D2U9 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HLA-DRB4X5D2U9 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HLA-DRB4X5D2U9 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HLA-DRB4X5D2U9 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HLA-DRB4X5D2U9 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HLA-DRB4X5D2U9 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HLA-DRB4X5D2U9 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
HLA-DRB4X5D2U9 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HLA-DRB4X5D2U9 AC100797.4-201ENST00000631653 1827 ntBASIC18.96■□□□□ 0.63
HLA-DRB4X5D2U9 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC18.96■□□□□ 0.63
HLA-DRB4X5D2U9 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC18.95■□□□□ 0.62
HLA-DRB4X5D2U9 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HLA-DRB4X5D2U9 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC18.95■□□□□ 0.62
HLA-DRB4X5D2U9 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HLA-DRB4X5D2U9 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
HLA-DRB4X5D2U9 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC18.95■□□□□ 0.62
HLA-DRB4X5D2U9 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC18.95■□□□□ 0.62
HLA-DRB4X5D2U9 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC18.95■□□□□ 0.62
HLA-DRB4X5D2U9 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC18.95■□□□□ 0.62
HLA-DRB4X5D2U9 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HLA-DRB4X5D2U9 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HLA-DRB4X5D2U9 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HLA-DRB4X5D2U9 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC18.93■□□□□ 0.62
HLA-DRB4X5D2U9 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
HLA-DRB4X5D2U9 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
HLA-DRB4X5D2U9 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
HLA-DRB4X5D2U9 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
HLA-DRB4X5D2U9 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HLA-DRB4X5D2U9 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HLA-DRB4X5D2U9 MLEC-202ENST00000412616 841 ntTSL 3 BASIC18.92■□□□□ 0.62
HLA-DRB4X5D2U9 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC18.92■□□□□ 0.62
HLA-DRB4X5D2U9 HGH1-207ENST00000628266 258 ntTSL 5 BASIC18.92■□□□□ 0.62
HLA-DRB4X5D2U9 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HLA-DRB4X5D2U9 PROC-203ENST00000409048 1586 ntTSL 5 BASIC18.91■□□□□ 0.62
HLA-DRB4X5D2U9 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HLA-DRB4X5D2U9 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC18.91■□□□□ 0.62
HLA-DRB4X5D2U9 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
HLA-DRB4X5D2U9 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC18.91■□□□□ 0.62
HLA-DRB4X5D2U9 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
HLA-DRB4X5D2U9 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC18.9■□□□□ 0.62
HLA-DRB4X5D2U9 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
HLA-DRB4X5D2U9 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
HLA-DRB4X5D2U9 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HLA-DRB4X5D2U9 SHF-207ENST00000560540 2062 ntTSL 5 BASIC18.89■□□□□ 0.62
HLA-DRB4X5D2U9 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC18.89■□□□□ 0.61
HLA-DRB4X5D2U9 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
HLA-DRB4X5D2U9 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
HLA-DRB4X5D2U9 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC18.89■□□□□ 0.61
HLA-DRB4X5D2U9 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
HLA-DRB4X5D2U9 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
HLA-DRB4X5D2U9 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC18.88■□□□□ 0.61
HLA-DRB4X5D2U9 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
HLA-DRB4X5D2U9 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HLA-DRB4X5D2U9 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HLA-DRB4X5D2U9 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
HLA-DRB4X5D2U9 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC18.87■□□□□ 0.61
HLA-DRB4X5D2U9 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HLA-DRB4X5D2U9 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
HLA-DRB4X5D2U9 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HLA-DRB4X5D2U9 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
HLA-DRB4X5D2U9 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC18.86■□□□□ 0.61
HLA-DRB4X5D2U9 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
HLA-DRB4X5D2U9 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
HLA-DRB4X5D2U9 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HLA-DRB4X5D2U9 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
HLA-DRB4X5D2U9 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
HLA-DRB4X5D2U9 AP002414.2-202ENST00000590929 1450 ntBASIC18.85■□□□□ 0.61
HLA-DRB4X5D2U9 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC18.85■□□□□ 0.61
HLA-DRB4X5D2U9 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HLA-DRB4X5D2U9 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HLA-DRB4X5D2U9 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
HLA-DRB4X5D2U9 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
HLA-DRB4X5D2U9 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HLA-DRB4X5D2U9 LINC01971-201ENST00000617888 1048 ntBASIC18.84■□□□□ 0.61
HLA-DRB4X5D2U9 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
HLA-DRB4X5D2U9 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
HLA-DRB4X5D2U9 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC18.83■□□□□ 0.6
HLA-DRB4X5D2U9 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC18.83■□□□□ 0.6
HLA-DRB4X5D2U9 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HLA-DRB4X5D2U9 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
HLA-DRB4X5D2U9 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HLA-DRB4X5D2U9 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HLA-DRB4X5D2U9 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC18.81■□□□□ 0.6
HLA-DRB4X5D2U9 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HLA-DRB4X5D2U9 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC18.81■□□□□ 0.6
HLA-DRB4X5D2U9 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC18.81■□□□□ 0.6
HLA-DRB4X5D2U9 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HLA-DRB4X5D2U9 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
HLA-DRB4X5D2U9 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC18.8■□□□□ 0.6
HLA-DRB4X5D2U9 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC18.8■□□□□ 0.6
HLA-DRB4X5D2U9 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC18.8■□□□□ 0.6
HLA-DRB4X5D2U9 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC18.8■□□□□ 0.6
HLA-DRB4X5D2U9 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HLA-DRB4X5D2U9 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HLA-DRB4X5D2U9 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms