Protein–RNA interactions for Protein: Q9NRQ5

SMCO4, Single-pass membrane and coiled-coil domain-containing protein 4, humanhuman

Predictions only

Length 59 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO4Q9NRQ5 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
SMCO4Q9NRQ5 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SMCO4Q9NRQ5 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
SMCO4Q9NRQ5 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
SMCO4Q9NRQ5 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
SMCO4Q9NRQ5 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SMCO4Q9NRQ5 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SMCO4Q9NRQ5 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SMCO4Q9NRQ5 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC20.09■□□□□ 0.81
SMCO4Q9NRQ5 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
SMCO4Q9NRQ5 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC20.09■□□□□ 0.81
SMCO4Q9NRQ5 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SMCO4Q9NRQ5 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC20.08■□□□□ 0.8
SMCO4Q9NRQ5 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
SMCO4Q9NRQ5 LINC00543-201ENST00000567234 1845 ntBASIC20.08■□□□□ 0.8
SMCO4Q9NRQ5 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SMCO4Q9NRQ5 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
SMCO4Q9NRQ5 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SMCO4Q9NRQ5 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SMCO4Q9NRQ5 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SMCO4Q9NRQ5 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC20.06■□□□□ 0.8
SMCO4Q9NRQ5 AC133561.1-201ENST00000568600 2415 ntBASIC20.06■□□□□ 0.8
SMCO4Q9NRQ5 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC20.06■□□□□ 0.8
SMCO4Q9NRQ5 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SMCO4Q9NRQ5 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SMCO4Q9NRQ5 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SMCO4Q9NRQ5 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC20.05■□□□□ 0.8
SMCO4Q9NRQ5 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC20.05■□□□□ 0.8
SMCO4Q9NRQ5 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SMCO4Q9NRQ5 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SMCO4Q9NRQ5 AC145676.1-201ENST00000514988 2004 ntBASIC20.05■□□□□ 0.8
SMCO4Q9NRQ5 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SMCO4Q9NRQ5 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SMCO4Q9NRQ5 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC20.04■□□□□ 0.8
SMCO4Q9NRQ5 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC20.04■□□□□ 0.8
SMCO4Q9NRQ5 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC20.04■□□□□ 0.8
SMCO4Q9NRQ5 AC012676.1-201ENST00000574705 1949 ntBASIC20.04■□□□□ 0.8
SMCO4Q9NRQ5 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SMCO4Q9NRQ5 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SMCO4Q9NRQ5 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
SMCO4Q9NRQ5 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SMCO4Q9NRQ5 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SMCO4Q9NRQ5 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
SMCO4Q9NRQ5 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
SMCO4Q9NRQ5 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC20■□□□□ 0.79
SMCO4Q9NRQ5 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
SMCO4Q9NRQ5 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC20■□□□□ 0.79
SMCO4Q9NRQ5 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SMCO4Q9NRQ5 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
SMCO4Q9NRQ5 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SMCO4Q9NRQ5 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SMCO4Q9NRQ5 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SMCO4Q9NRQ5 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC19.99■□□□□ 0.79
SMCO4Q9NRQ5 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SMCO4Q9NRQ5 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC19.99■□□□□ 0.79
SMCO4Q9NRQ5 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
SMCO4Q9NRQ5 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SMCO4Q9NRQ5 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
SMCO4Q9NRQ5 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SMCO4Q9NRQ5 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC19.98■□□□□ 0.79
SMCO4Q9NRQ5 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SMCO4Q9NRQ5 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SMCO4Q9NRQ5 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SMCO4Q9NRQ5 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SMCO4Q9NRQ5 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC19.97■□□□□ 0.79
SMCO4Q9NRQ5 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SMCO4Q9NRQ5 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SMCO4Q9NRQ5 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
SMCO4Q9NRQ5 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SMCO4Q9NRQ5 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SMCO4Q9NRQ5 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
SMCO4Q9NRQ5 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SMCO4Q9NRQ5 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SMCO4Q9NRQ5 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
SMCO4Q9NRQ5 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SMCO4Q9NRQ5 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
SMCO4Q9NRQ5 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SMCO4Q9NRQ5 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SMCO4Q9NRQ5 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SMCO4Q9NRQ5 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC19.95■□□□□ 0.78
SMCO4Q9NRQ5 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SMCO4Q9NRQ5 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SMCO4Q9NRQ5 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC19.94■□□□□ 0.78
SMCO4Q9NRQ5 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SMCO4Q9NRQ5 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SMCO4Q9NRQ5 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
SMCO4Q9NRQ5 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SMCO4Q9NRQ5 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SMCO4Q9NRQ5 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SMCO4Q9NRQ5 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
SMCO4Q9NRQ5 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
SMCO4Q9NRQ5 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SMCO4Q9NRQ5 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SMCO4Q9NRQ5 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SMCO4Q9NRQ5 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SMCO4Q9NRQ5 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
SMCO4Q9NRQ5 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
SMCO4Q9NRQ5 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
SMCO4Q9NRQ5 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SMCO4Q9NRQ5 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 7.4 ms