Protein–RNA interactions for Protein: Q96N35

LINC00052, Putative uncharacterized protein encoded by LINC00052, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00052Q96N35 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC20.84■□□□□ 0.93
LINC00052Q96N35 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
LINC00052Q96N35 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LINC00052Q96N35 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
LINC00052Q96N35 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC20.83■□□□□ 0.92
LINC00052Q96N35 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
LINC00052Q96N35 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LINC00052Q96N35 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LINC00052Q96N35 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
LINC00052Q96N35 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
LINC00052Q96N35 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC20.81■□□□□ 0.92
LINC00052Q96N35 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
LINC00052Q96N35 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
LINC00052Q96N35 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
LINC00052Q96N35 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
LINC00052Q96N35 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LINC00052Q96N35 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC20.8■□□□□ 0.92
LINC00052Q96N35 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
LINC00052Q96N35 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LINC00052Q96N35 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
LINC00052Q96N35 AL031258.1-201ENST00000623562 325 ntBASIC20.79■□□□□ 0.92
LINC00052Q96N35 AL135925.1-201ENST00000605920 1701 ntBASIC20.78■□□□□ 0.92
LINC00052Q96N35 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LINC00052Q96N35 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC20.78■□□□□ 0.92
LINC00052Q96N35 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LINC00052Q96N35 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC20.78■□□□□ 0.92
LINC00052Q96N35 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LINC00052Q96N35 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LINC00052Q96N35 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
LINC00052Q96N35 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
LINC00052Q96N35 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC20.78■□□□□ 0.92
LINC00052Q96N35 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
LINC00052Q96N35 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
LINC00052Q96N35 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC20.77■□□□□ 0.92
LINC00052Q96N35 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
LINC00052Q96N35 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
LINC00052Q96N35 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC20.77■□□□□ 0.91
LINC00052Q96N35 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC20.76■□□□□ 0.91
LINC00052Q96N35 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LINC00052Q96N35 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
LINC00052Q96N35 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
LINC00052Q96N35 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LINC00052Q96N35 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
LINC00052Q96N35 EBPL-203ENST00000378270 579 ntTSL 2 BASIC20.75■□□□□ 0.91
LINC00052Q96N35 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
LINC00052Q96N35 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
LINC00052Q96N35 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LINC00052Q96N35 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LINC00052Q96N35 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
LINC00052Q96N35 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
LINC00052Q96N35 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
LINC00052Q96N35 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
LINC00052Q96N35 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC20.73■□□□□ 0.91
LINC00052Q96N35 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
LINC00052Q96N35 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
LINC00052Q96N35 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
LINC00052Q96N35 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC20.72■□□□□ 0.91
LINC00052Q96N35 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC20.72■□□□□ 0.91
LINC00052Q96N35 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC20.72■□□□□ 0.91
LINC00052Q96N35 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC20.72■□□□□ 0.91
LINC00052Q96N35 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LINC00052Q96N35 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LINC00052Q96N35 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LINC00052Q96N35 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC20.71■□□□□ 0.91
LINC00052Q96N35 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
LINC00052Q96N35 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC20.71■□□□□ 0.91
LINC00052Q96N35 CLDN5-201ENST00000403084 2357 ntBASIC20.7■□□□□ 0.9
LINC00052Q96N35 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
LINC00052Q96N35 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC20.69■□□□□ 0.9
LINC00052Q96N35 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LINC00052Q96N35 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
LINC00052Q96N35 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LINC00052Q96N35 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
LINC00052Q96N35 LINC00543-201ENST00000567234 1845 ntBASIC20.68■□□□□ 0.9
LINC00052Q96N35 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
LINC00052Q96N35 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC20.68■□□□□ 0.9
LINC00052Q96N35 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LINC00052Q96N35 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC20.67■□□□□ 0.9
LINC00052Q96N35 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LINC00052Q96N35 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC20.67■□□□□ 0.9
LINC00052Q96N35 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LINC00052Q96N35 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC20.67■□□□□ 0.9
LINC00052Q96N35 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
LINC00052Q96N35 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
LINC00052Q96N35 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LINC00052Q96N35 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
LINC00052Q96N35 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
LINC00052Q96N35 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LINC00052Q96N35 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LINC00052Q96N35 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LINC00052Q96N35 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
LINC00052Q96N35 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LINC00052Q96N35 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC20.65■□□□□ 0.9
LINC00052Q96N35 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LINC00052Q96N35 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
LINC00052Q96N35 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
LINC00052Q96N35 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LINC00052Q96N35 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC20.64■□□□□ 0.9
LINC00052Q96N35 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
LINC00052Q96N35 AC012676.1-201ENST00000574705 1949 ntBASIC20.64■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 9.9 ms