Protein–RNA interactions for Protein: Q6NWY9

PRPF40B, Pre-mRNA-processing factor 40 homolog B, humanhuman

Known RBP Predictions only

Length 871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40BQ6NWY9 HYI-213ENST00000583037 1322 ntTSL 5 BASIC32.06■■■□□ 2.72
PRPF40BQ6NWY9 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC32.05■■■□□ 2.72
PRPF40BQ6NWY9 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC32.05■■■□□ 2.72
PRPF40BQ6NWY9 AC060814.1-201ENST00000554326 538 ntBASIC32.05■■■□□ 2.72
PRPF40BQ6NWY9 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC32.05■■■□□ 2.72
PRPF40BQ6NWY9 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC32.05■■■□□ 2.72
PRPF40BQ6NWY9 AC135983.2-203ENST00000454486 1613 ntBASIC32.04■■■□□ 2.72
PRPF40BQ6NWY9 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
PRPF40BQ6NWY9 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC32.04■■■□□ 2.72
PRPF40BQ6NWY9 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC32.03■■■□□ 2.72
PRPF40BQ6NWY9 AC127502.1-201ENST00000399971 1502 ntBASIC32.03■■■□□ 2.72
PRPF40BQ6NWY9 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC32.03■■■□□ 2.72
PRPF40BQ6NWY9 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC32.01■■■□□ 2.71
PRPF40BQ6NWY9 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC32■■■□□ 2.71
PRPF40BQ6NWY9 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
PRPF40BQ6NWY9 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC32■■■□□ 2.71
PRPF40BQ6NWY9 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC31.99■■■□□ 2.71
PRPF40BQ6NWY9 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC31.99■■■□□ 2.71
PRPF40BQ6NWY9 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
PRPF40BQ6NWY9 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC31.98■■■□□ 2.71
PRPF40BQ6NWY9 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC31.98■■■□□ 2.71
PRPF40BQ6NWY9 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC31.97■■■□□ 2.71
PRPF40BQ6NWY9 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC31.97■■■□□ 2.71
PRPF40BQ6NWY9 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC31.97■■■□□ 2.71
PRPF40BQ6NWY9 AC148477.6-201ENST00000623746 465 ntBASIC31.97■■■□□ 2.71
PRPF40BQ6NWY9 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC31.97■■■□□ 2.71
PRPF40BQ6NWY9 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC31.97■■■□□ 2.71
PRPF40BQ6NWY9 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC31.96■■■□□ 2.71
PRPF40BQ6NWY9 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC31.96■■■□□ 2.71
PRPF40BQ6NWY9 GFER-205ENST00000569451 517 ntTSL 5 BASIC31.96■■■□□ 2.71
PRPF40BQ6NWY9 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC31.96■■■□□ 2.71
PRPF40BQ6NWY9 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC31.96■■■□□ 2.71
PRPF40BQ6NWY9 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC31.95■■■□□ 2.71
PRPF40BQ6NWY9 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC31.95■■■□□ 2.71
PRPF40BQ6NWY9 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC31.95■■■□□ 2.7
PRPF40BQ6NWY9 AC110285.7-201ENST00000624417 1536 ntBASIC31.95■■■□□ 2.7
PRPF40BQ6NWY9 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
PRPF40BQ6NWY9 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
PRPF40BQ6NWY9 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC31.92■■■□□ 2.7
PRPF40BQ6NWY9 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
PRPF40BQ6NWY9 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC31.91■■■□□ 2.7
PRPF40BQ6NWY9 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC31.91■■■□□ 2.7
PRPF40BQ6NWY9 KRT18P60-201ENST00000312876 1297 ntBASIC31.91■■■□□ 2.7
PRPF40BQ6NWY9 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC31.91■■■□□ 2.7
PRPF40BQ6NWY9 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
PRPF40BQ6NWY9 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
PRPF40BQ6NWY9 TSPY13P-201ENST00000338964 914 ntBASIC31.9■■■□□ 2.7
PRPF40BQ6NWY9 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
PRPF40BQ6NWY9 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC31.9■■■□□ 2.7
PRPF40BQ6NWY9 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
PRPF40BQ6NWY9 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC31.89■■■□□ 2.7
PRPF40BQ6NWY9 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC31.89■■■□□ 2.7
PRPF40BQ6NWY9 AC004987.1-201ENST00000428627 508 ntBASIC31.88■■■□□ 2.69
PRPF40BQ6NWY9 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC31.88■■■□□ 2.69
PRPF40BQ6NWY9 AC092296.2-201ENST00000589470 999 ntBASIC31.88■■■□□ 2.69
PRPF40BQ6NWY9 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC31.88■■■□□ 2.69
PRPF40BQ6NWY9 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC31.87■■■□□ 2.69
PRPF40BQ6NWY9 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC31.87■■■□□ 2.69
PRPF40BQ6NWY9 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC31.87■■■□□ 2.69
PRPF40BQ6NWY9 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC31.86■■■□□ 2.69
PRPF40BQ6NWY9 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
PRPF40BQ6NWY9 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
PRPF40BQ6NWY9 ATP5G2P3-201ENST00000429083 425 ntBASIC31.85■■■□□ 2.69
PRPF40BQ6NWY9 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC31.85■■■□□ 2.69
PRPF40BQ6NWY9 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
PRPF40BQ6NWY9 ST7-AS1-201ENST00000456775 1889 ntBASIC31.84■■■□□ 2.69
PRPF40BQ6NWY9 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
PRPF40BQ6NWY9 MIR219A2-201ENST00000608502 1504 ntBASIC31.84■■■□□ 2.69
PRPF40BQ6NWY9 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
PRPF40BQ6NWY9 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC31.83■■■□□ 2.69
PRPF40BQ6NWY9 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC31.83■■■□□ 2.69
PRPF40BQ6NWY9 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC31.83■■■□□ 2.69
PRPF40BQ6NWY9 RPS2-210ENST00000530225 765 ntTSL 2 BASIC31.82■■■□□ 2.68
PRPF40BQ6NWY9 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC31.82■■■□□ 2.68
PRPF40BQ6NWY9 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
PRPF40BQ6NWY9 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC31.81■■■□□ 2.68
PRPF40BQ6NWY9 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
PRPF40BQ6NWY9 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
PRPF40BQ6NWY9 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC31.81■■■□□ 2.68
PRPF40BQ6NWY9 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC31.81■■■□□ 2.68
PRPF40BQ6NWY9 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC31.81■■■□□ 2.68
PRPF40BQ6NWY9 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC31.81■■■□□ 2.68
PRPF40BQ6NWY9 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
PRPF40BQ6NWY9 AL135925.1-201ENST00000605920 1701 ntBASIC31.8■■■□□ 2.68
PRPF40BQ6NWY9 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
PRPF40BQ6NWY9 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC31.8■■■□□ 2.68
PRPF40BQ6NWY9 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC31.8■■■□□ 2.68
PRPF40BQ6NWY9 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC31.8■■■□□ 2.68
PRPF40BQ6NWY9 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC31.79■■■□□ 2.68
PRPF40BQ6NWY9 GUK1-208ENST00000366728 842 ntTSL 2 BASIC31.79■■■□□ 2.68
PRPF40BQ6NWY9 RARRES2P1-201ENST00000474487 481 ntBASIC31.79■■■□□ 2.68
PRPF40BQ6NWY9 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC31.78■■■□□ 2.68
PRPF40BQ6NWY9 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
PRPF40BQ6NWY9 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
PRPF40BQ6NWY9 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
PRPF40BQ6NWY9 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC31.78■■■□□ 2.68
PRPF40BQ6NWY9 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC31.78■■■□□ 2.68
PRPF40BQ6NWY9 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC31.78■■■□□ 2.68
PRPF40BQ6NWY9 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC31.77■■■□□ 2.68
PRPF40BQ6NWY9 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC31.77■■■□□ 2.68
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms