Protein–RNA interactions for Protein: O75631

UPK3A, Uroplakin-3a, humanhuman

Predictions only

Length 287 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3AO75631 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC22.74■■□□□ 1.23
UPK3AO75631 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
UPK3AO75631 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC22.73■■□□□ 1.23
UPK3AO75631 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
UPK3AO75631 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
UPK3AO75631 ZNRF2P2-203ENST00000454624 420 ntBASIC22.73■■□□□ 1.23
UPK3AO75631 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
UPK3AO75631 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
UPK3AO75631 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
UPK3AO75631 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC22.72■■□□□ 1.23
UPK3AO75631 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
UPK3AO75631 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC22.71■■□□□ 1.23
UPK3AO75631 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
UPK3AO75631 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC22.71■■□□□ 1.23
UPK3AO75631 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC22.71■■□□□ 1.23
UPK3AO75631 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC22.71■■□□□ 1.23
UPK3AO75631 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC22.71■■□□□ 1.23
UPK3AO75631 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
UPK3AO75631 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
UPK3AO75631 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC22.71■■□□□ 1.23
UPK3AO75631 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
UPK3AO75631 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC22.7■■□□□ 1.23
UPK3AO75631 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC22.7■■□□□ 1.22
UPK3AO75631 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
UPK3AO75631 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC22.7■■□□□ 1.22
UPK3AO75631 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC22.69■■□□□ 1.22
UPK3AO75631 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC22.69■■□□□ 1.22
UPK3AO75631 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
UPK3AO75631 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC22.68■■□□□ 1.22
UPK3AO75631 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC22.68■■□□□ 1.22
UPK3AO75631 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
UPK3AO75631 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC22.68■■□□□ 1.22
UPK3AO75631 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
UPK3AO75631 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
UPK3AO75631 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
UPK3AO75631 AC100797.4-201ENST00000631653 1827 ntBASIC22.68■■□□□ 1.22
UPK3AO75631 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
UPK3AO75631 PROC-203ENST00000409048 1586 ntTSL 5 BASIC22.67■■□□□ 1.22
UPK3AO75631 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
UPK3AO75631 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
UPK3AO75631 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
UPK3AO75631 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
UPK3AO75631 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
UPK3AO75631 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
UPK3AO75631 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC22.66■■□□□ 1.22
UPK3AO75631 BX255925.1-201ENST00000566954 1854 ntBASIC22.66■■□□□ 1.22
UPK3AO75631 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
UPK3AO75631 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC22.65■■□□□ 1.22
UPK3AO75631 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
UPK3AO75631 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC22.65■■□□□ 1.22
UPK3AO75631 LINC01971-201ENST00000617888 1048 ntBASIC22.65■■□□□ 1.22
UPK3AO75631 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC22.65■■□□□ 1.22
UPK3AO75631 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
UPK3AO75631 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC22.64■■□□□ 1.22
UPK3AO75631 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
UPK3AO75631 MEST-211ENST00000437945 1455 ntTSL 5 BASIC22.64■■□□□ 1.21
UPK3AO75631 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC22.64■■□□□ 1.21
UPK3AO75631 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
UPK3AO75631 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
UPK3AO75631 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC22.63■■□□□ 1.21
UPK3AO75631 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC22.63■■□□□ 1.21
UPK3AO75631 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC22.62■■□□□ 1.21
UPK3AO75631 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC22.62■■□□□ 1.21
UPK3AO75631 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
UPK3AO75631 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC22.61■■□□□ 1.21
UPK3AO75631 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC22.61■■□□□ 1.21
UPK3AO75631 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
UPK3AO75631 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
UPK3AO75631 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
UPK3AO75631 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
UPK3AO75631 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC22.6■■□□□ 1.21
UPK3AO75631 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC22.59■■□□□ 1.21
UPK3AO75631 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
UPK3AO75631 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC22.59■■□□□ 1.21
UPK3AO75631 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC22.59■■□□□ 1.21
UPK3AO75631 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC22.59■■□□□ 1.21
UPK3AO75631 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC22.59■■□□□ 1.21
UPK3AO75631 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC22.58■■□□□ 1.21
UPK3AO75631 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC22.58■■□□□ 1.21
UPK3AO75631 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC22.58■■□□□ 1.21
UPK3AO75631 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC22.58■■□□□ 1.21
UPK3AO75631 DUX4L11-201ENST00000611504 1267 ntBASIC22.58■■□□□ 1.21
UPK3AO75631 DUX4L12-201ENST00000614593 1267 ntBASIC22.58■■□□□ 1.21
UPK3AO75631 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC22.58■■□□□ 1.21
UPK3AO75631 DUX4L14-201ENST00000621227 1267 ntBASIC22.58■■□□□ 1.21
UPK3AO75631 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
UPK3AO75631 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC22.58■■□□□ 1.2
UPK3AO75631 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC22.58■■□□□ 1.2
UPK3AO75631 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC22.58■■□□□ 1.2
UPK3AO75631 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
UPK3AO75631 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
UPK3AO75631 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
UPK3AO75631 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC22.57■■□□□ 1.2
UPK3AO75631 MIR7108-201ENST00000614319 87 ntBASIC22.57■■□□□ 1.2
UPK3AO75631 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
UPK3AO75631 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC22.56■■□□□ 1.2
UPK3AO75631 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
UPK3AO75631 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
UPK3AO75631 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC22.55■■□□□ 1.2
UPK3AO75631 SHF-208ENST00000560734 1731 ntTSL 3 BASIC22.55■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 10.6 ms