Protein–RNA interactions for Protein: A0A0B4J275

TRAV17, T-cell receptor alpha variable 17 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV17A0A0B4J275 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
TRAV17A0A0B4J275 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
TRAV17A0A0B4J275 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC23.26■■□□□ 1.31
TRAV17A0A0B4J275 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
TRAV17A0A0B4J275 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
TRAV17A0A0B4J275 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
TRAV17A0A0B4J275 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
TRAV17A0A0B4J275 AC060814.1-201ENST00000554326 538 ntBASIC23.25■■□□□ 1.31
TRAV17A0A0B4J275 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
TRAV17A0A0B4J275 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC23.25■■□□□ 1.31
TRAV17A0A0B4J275 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
TRAV17A0A0B4J275 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC23.25■■□□□ 1.31
TRAV17A0A0B4J275 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
TRAV17A0A0B4J275 NTF6A-201ENST00000591175 560 ntBASIC23.24■■□□□ 1.31
TRAV17A0A0B4J275 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC23.24■■□□□ 1.31
TRAV17A0A0B4J275 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
TRAV17A0A0B4J275 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC23.22■■□□□ 1.31
TRAV17A0A0B4J275 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
TRAV17A0A0B4J275 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC23.22■■□□□ 1.31
TRAV17A0A0B4J275 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC23.22■■□□□ 1.31
TRAV17A0A0B4J275 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
TRAV17A0A0B4J275 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
TRAV17A0A0B4J275 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC23.22■■□□□ 1.31
TRAV17A0A0B4J275 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
TRAV17A0A0B4J275 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
TRAV17A0A0B4J275 AP004833.2-201ENST00000532228 1454 ntBASIC23.21■■□□□ 1.31
TRAV17A0A0B4J275 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC23.21■■□□□ 1.31
TRAV17A0A0B4J275 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
TRAV17A0A0B4J275 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC23.2■■□□□ 1.3
TRAV17A0A0B4J275 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
TRAV17A0A0B4J275 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
TRAV17A0A0B4J275 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
TRAV17A0A0B4J275 AC126177.7-201ENST00000547904 679 ntBASIC23.2■■□□□ 1.3
TRAV17A0A0B4J275 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
TRAV17A0A0B4J275 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC23.19■■□□□ 1.3
TRAV17A0A0B4J275 ST7-AS1-201ENST00000456775 1889 ntBASIC23.19■■□□□ 1.3
TRAV17A0A0B4J275 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
TRAV17A0A0B4J275 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
TRAV17A0A0B4J275 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC23.18■■□□□ 1.3
TRAV17A0A0B4J275 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC23.18■■□□□ 1.3
TRAV17A0A0B4J275 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
TRAV17A0A0B4J275 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
TRAV17A0A0B4J275 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
TRAV17A0A0B4J275 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
TRAV17A0A0B4J275 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
TRAV17A0A0B4J275 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
TRAV17A0A0B4J275 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC23.15■■□□□ 1.3
TRAV17A0A0B4J275 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
TRAV17A0A0B4J275 AC012354.3-201ENST00000623734 483 ntBASIC23.15■■□□□ 1.3
TRAV17A0A0B4J275 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC23.15■■□□□ 1.3
TRAV17A0A0B4J275 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC23.14■■□□□ 1.29
TRAV17A0A0B4J275 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
TRAV17A0A0B4J275 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
TRAV17A0A0B4J275 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
TRAV17A0A0B4J275 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC23.13■■□□□ 1.29
TRAV17A0A0B4J275 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
TRAV17A0A0B4J275 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC23.13■■□□□ 1.29
TRAV17A0A0B4J275 AC092296.2-201ENST00000589470 999 ntBASIC23.13■■□□□ 1.29
TRAV17A0A0B4J275 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC23.13■■□□□ 1.29
TRAV17A0A0B4J275 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC23.12■■□□□ 1.29
TRAV17A0A0B4J275 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC23.12■■□□□ 1.29
TRAV17A0A0B4J275 HYI-213ENST00000583037 1322 ntTSL 5 BASIC23.11■■□□□ 1.29
TRAV17A0A0B4J275 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
TRAV17A0A0B4J275 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC23.11■■□□□ 1.29
TRAV17A0A0B4J275 ECEL1P2-201ENST00000461596 1295 ntBASIC23.11■■□□□ 1.29
TRAV17A0A0B4J275 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
TRAV17A0A0B4J275 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
TRAV17A0A0B4J275 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC23.09■■□□□ 1.29
TRAV17A0A0B4J275 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
TRAV17A0A0B4J275 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
TRAV17A0A0B4J275 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
TRAV17A0A0B4J275 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
TRAV17A0A0B4J275 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
TRAV17A0A0B4J275 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
TRAV17A0A0B4J275 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC23.06■■□□□ 1.28
TRAV17A0A0B4J275 U85056.1-201ENST00000616429 682 ntBASIC23.06■■□□□ 1.28
TRAV17A0A0B4J275 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC23.06■■□□□ 1.28
TRAV17A0A0B4J275 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC23.05■■□□□ 1.28
TRAV17A0A0B4J275 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC23.05■■□□□ 1.28
TRAV17A0A0B4J275 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
TRAV17A0A0B4J275 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
TRAV17A0A0B4J275 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
TRAV17A0A0B4J275 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
TRAV17A0A0B4J275 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC23.04■■□□□ 1.28
TRAV17A0A0B4J275 MED25-210ENST00000612854 801 ntTSL 5 BASIC23.04■■□□□ 1.28
TRAV17A0A0B4J275 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
TRAV17A0A0B4J275 MED25-214ENST00000622402 642 ntTSL 5 BASIC23.04■■□□□ 1.28
TRAV17A0A0B4J275 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC23.04■■□□□ 1.28
TRAV17A0A0B4J275 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
TRAV17A0A0B4J275 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
TRAV17A0A0B4J275 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
TRAV17A0A0B4J275 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
TRAV17A0A0B4J275 AC100797.4-201ENST00000631653 1827 ntBASIC23.03■■□□□ 1.28
TRAV17A0A0B4J275 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
TRAV17A0A0B4J275 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
TRAV17A0A0B4J275 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
TRAV17A0A0B4J275 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
TRAV17A0A0B4J275 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC23.02■■□□□ 1.28
TRAV17A0A0B4J275 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
TRAV17A0A0B4J275 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms