Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
USH1CQ9Y6N9 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
USH1CQ9Y6N9 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
USH1CQ9Y6N9 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
USH1CQ9Y6N9 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC19.07■□□□□ 0.64
USH1CQ9Y6N9 AC007322.4-201ENST00000509611 723 ntBASIC19.07■□□□□ 0.64
USH1CQ9Y6N9 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC19.07■□□□□ 0.64
USH1CQ9Y6N9 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
USH1CQ9Y6N9 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC19.07■□□□□ 0.64
USH1CQ9Y6N9 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
USH1CQ9Y6N9 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
USH1CQ9Y6N9 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
USH1CQ9Y6N9 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.07■□□□□ 0.64
USH1CQ9Y6N9 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC19.07■□□□□ 0.64
USH1CQ9Y6N9 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC19.07■□□□□ 0.64
USH1CQ9Y6N9 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
USH1CQ9Y6N9 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
USH1CQ9Y6N9 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
USH1CQ9Y6N9 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC19.06■□□□□ 0.64
USH1CQ9Y6N9 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
USH1CQ9Y6N9 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
USH1CQ9Y6N9 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
USH1CQ9Y6N9 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
USH1CQ9Y6N9 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
USH1CQ9Y6N9 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
USH1CQ9Y6N9 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC19.06■□□□□ 0.64
USH1CQ9Y6N9 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC19.06■□□□□ 0.64
USH1CQ9Y6N9 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
USH1CQ9Y6N9 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
USH1CQ9Y6N9 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
USH1CQ9Y6N9 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC19.06■□□□□ 0.64
USH1CQ9Y6N9 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
USH1CQ9Y6N9 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC19.06■□□□□ 0.64
USH1CQ9Y6N9 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
USH1CQ9Y6N9 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
USH1CQ9Y6N9 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
USH1CQ9Y6N9 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
USH1CQ9Y6N9 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
USH1CQ9Y6N9 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
USH1CQ9Y6N9 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
USH1CQ9Y6N9 AC106820.2-201ENST00000563775 3264 ntBASIC19.06■□□□□ 0.64
USH1CQ9Y6N9 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
USH1CQ9Y6N9 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
USH1CQ9Y6N9 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
USH1CQ9Y6N9 GCK-205ENST00000437084 1385 ntTSL 5 BASIC19.06■□□□□ 0.64
USH1CQ9Y6N9 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
USH1CQ9Y6N9 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
USH1CQ9Y6N9 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
USH1CQ9Y6N9 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
USH1CQ9Y6N9 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC19.05■□□□□ 0.64
USH1CQ9Y6N9 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC19.05■□□□□ 0.64
USH1CQ9Y6N9 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC19.05■□□□□ 0.64
USH1CQ9Y6N9 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
USH1CQ9Y6N9 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
USH1CQ9Y6N9 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
USH1CQ9Y6N9 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
USH1CQ9Y6N9 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
USH1CQ9Y6N9 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC19.05■□□□□ 0.64
USH1CQ9Y6N9 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
USH1CQ9Y6N9 PLLP-204ENST00000569059 665 ntTSL 3 BASIC19.05■□□□□ 0.64
USH1CQ9Y6N9 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
USH1CQ9Y6N9 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC19.05■□□□□ 0.64
USH1CQ9Y6N9 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC19.05■□□□□ 0.64
USH1CQ9Y6N9 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
USH1CQ9Y6N9 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
USH1CQ9Y6N9 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
USH1CQ9Y6N9 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC19.05■□□□□ 0.64
USH1CQ9Y6N9 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
USH1CQ9Y6N9 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
USH1CQ9Y6N9 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC19.04■□□□□ 0.64
USH1CQ9Y6N9 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
USH1CQ9Y6N9 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC19.04■□□□□ 0.64
USH1CQ9Y6N9 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC19.04■□□□□ 0.64
USH1CQ9Y6N9 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC19.04■□□□□ 0.64
USH1CQ9Y6N9 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
USH1CQ9Y6N9 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC19.04■□□□□ 0.64
USH1CQ9Y6N9 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC19.04■□□□□ 0.64
USH1CQ9Y6N9 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
USH1CQ9Y6N9 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
USH1CQ9Y6N9 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
USH1CQ9Y6N9 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
USH1CQ9Y6N9 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC19.04■□□□□ 0.64
USH1CQ9Y6N9 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
USH1CQ9Y6N9 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
USH1CQ9Y6N9 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
USH1CQ9Y6N9 KRT18P68-201ENST00000392293 1000 ntBASIC19.04■□□□□ 0.64
USH1CQ9Y6N9 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC19.04■□□□□ 0.64
USH1CQ9Y6N9 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
USH1CQ9Y6N9 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
USH1CQ9Y6N9 AC013268.1-206ENST00000638368 961 ntBASIC19.04■□□□□ 0.64
USH1CQ9Y6N9 AC112229.1-201ENST00000639295 961 ntBASIC19.04■□□□□ 0.64
USH1CQ9Y6N9 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
USH1CQ9Y6N9 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC19.04■□□□□ 0.64
USH1CQ9Y6N9 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
USH1CQ9Y6N9 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC19.04■□□□□ 0.64
USH1CQ9Y6N9 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
USH1CQ9Y6N9 MADD-208ENST00000405573 1823 ntTSL 5 BASIC19.04■□□□□ 0.64
USH1CQ9Y6N9 MKRN4P-201ENST00000444706 1521 ntBASIC19.04■□□□□ 0.64
USH1CQ9Y6N9 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
USH1CQ9Y6N9 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms