Protein–RNA interactions for Protein: Q9NUP1

BLOC1S4, Biogenesis of lysosome-related organelles complex 1 subunit 4, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BLOC1S4Q9NUP1 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
BLOC1S4Q9NUP1 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
BLOC1S4Q9NUP1 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
BLOC1S4Q9NUP1 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
BLOC1S4Q9NUP1 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC21.32■■□□□ 1
BLOC1S4Q9NUP1 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC21.32■■□□□ 1
BLOC1S4Q9NUP1 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC21.32■■□□□ 1
BLOC1S4Q9NUP1 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC21.32■■□□□ 1
BLOC1S4Q9NUP1 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC21.32■■□□□ 1
BLOC1S4Q9NUP1 AC006333.2-201ENST00000607957 2099 ntBASIC21.32■■□□□ 1
BLOC1S4Q9NUP1 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
BLOC1S4Q9NUP1 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
BLOC1S4Q9NUP1 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
BLOC1S4Q9NUP1 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
BLOC1S4Q9NUP1 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC21.32■■□□□ 1
BLOC1S4Q9NUP1 AC116562.2-201ENST00000507042 360 ntBASIC21.32■■□□□ 1
BLOC1S4Q9NUP1 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC21.32■■□□□ 1
BLOC1S4Q9NUP1 NUDT16P1-203ENST00000513809 620 ntBASIC21.32■■□□□ 1
BLOC1S4Q9NUP1 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC21.32■■□□□ 1
BLOC1S4Q9NUP1 AC011298.2-201ENST00000617989 482 ntBASIC21.32■■□□□ 1
BLOC1S4Q9NUP1 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
BLOC1S4Q9NUP1 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC21.32■■□□□ 1
BLOC1S4Q9NUP1 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC21.32■■□□□ 1
BLOC1S4Q9NUP1 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC21.32■■□□□ 1
BLOC1S4Q9NUP1 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
BLOC1S4Q9NUP1 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC21.31■■□□□ 1
BLOC1S4Q9NUP1 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
BLOC1S4Q9NUP1 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC21.31■■□□□ 1
BLOC1S4Q9NUP1 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC21.31■■□□□ 1
BLOC1S4Q9NUP1 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
BLOC1S4Q9NUP1 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC21.31■■□□□ 1
BLOC1S4Q9NUP1 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
BLOC1S4Q9NUP1 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC21.31■■□□□ 1
BLOC1S4Q9NUP1 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC21.31■■□□□ 1
BLOC1S4Q9NUP1 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC21.31■■□□□ 1
BLOC1S4Q9NUP1 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC21.31■■□□□ 1
BLOC1S4Q9NUP1 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC21.31■■□□□ 1
BLOC1S4Q9NUP1 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC21.31■■□□□ 1
BLOC1S4Q9NUP1 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC21.31■■□□□ 1
BLOC1S4Q9NUP1 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
BLOC1S4Q9NUP1 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC21.3■■□□□ 1
BLOC1S4Q9NUP1 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
BLOC1S4Q9NUP1 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC21.3■■□□□ 1
BLOC1S4Q9NUP1 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
BLOC1S4Q9NUP1 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC21.3■■□□□ 1
BLOC1S4Q9NUP1 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
BLOC1S4Q9NUP1 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
BLOC1S4Q9NUP1 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC21.3■■□□□ 1
BLOC1S4Q9NUP1 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC21.3■■□□□ 1
BLOC1S4Q9NUP1 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC21.3■■□□□ 1
BLOC1S4Q9NUP1 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC21.3■■□□□ 1
BLOC1S4Q9NUP1 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
BLOC1S4Q9NUP1 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC21.3■■□□□ 1
BLOC1S4Q9NUP1 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
BLOC1S4Q9NUP1 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC21.3■■□□□ 1
BLOC1S4Q9NUP1 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
BLOC1S4Q9NUP1 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC21.3■■□□□ 1
BLOC1S4Q9NUP1 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC21.3■■□□□ 1
BLOC1S4Q9NUP1 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
BLOC1S4Q9NUP1 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC21.29■■□□□ 1
BLOC1S4Q9NUP1 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
BLOC1S4Q9NUP1 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC21.29■■□□□ 1
BLOC1S4Q9NUP1 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
BLOC1S4Q9NUP1 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC21.29■■□□□ 1
BLOC1S4Q9NUP1 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
BLOC1S4Q9NUP1 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC21.29■■□□□ 1
BLOC1S4Q9NUP1 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
BLOC1S4Q9NUP1 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC21.29■■□□□ 1
BLOC1S4Q9NUP1 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
BLOC1S4Q9NUP1 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
BLOC1S4Q9NUP1 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC21.29■■□□□ 1
BLOC1S4Q9NUP1 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC21.29■■□□□ 1
BLOC1S4Q9NUP1 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC21.29■■□□□ 1
BLOC1S4Q9NUP1 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC21.29■■□□□ 1
BLOC1S4Q9NUP1 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC21.29■■□□□ 1
BLOC1S4Q9NUP1 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC21.29■■□□□ 1
BLOC1S4Q9NUP1 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC21.29■■□□□ 1
BLOC1S4Q9NUP1 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC21.29■■□□□ 1
BLOC1S4Q9NUP1 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC21.29■■□□□ 1
BLOC1S4Q9NUP1 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
BLOC1S4Q9NUP1 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
BLOC1S4Q9NUP1 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
BLOC1S4Q9NUP1 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
BLOC1S4Q9NUP1 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC21.28■■□□□ 1
BLOC1S4Q9NUP1 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC21.28■■□□□ 1
BLOC1S4Q9NUP1 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
BLOC1S4Q9NUP1 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
BLOC1S4Q9NUP1 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC21.28■■□□□ 1
BLOC1S4Q9NUP1 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC21.28■■□□□ 1
BLOC1S4Q9NUP1 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
BLOC1S4Q9NUP1 FSCN1P1-201ENST00000568912 1481 ntBASIC21.28■■□□□ 1
BLOC1S4Q9NUP1 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC21.28■■□□□ 1
BLOC1S4Q9NUP1 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC21.28■■□□□ 1
BLOC1S4Q9NUP1 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC21.28■■□□□ 1
BLOC1S4Q9NUP1 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
BLOC1S4Q9NUP1 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
BLOC1S4Q9NUP1 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC21.28■■□□□ 1
BLOC1S4Q9NUP1 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC21.28■■□□□ 1
BLOC1S4Q9NUP1 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
BLOC1S4Q9NUP1 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC21.28■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms