Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC23.45■■□□□ 1.35
USP48Q86UV5 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC23.45■■□□□ 1.34
USP48Q86UV5 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC23.45■■□□□ 1.34
USP48Q86UV5 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
USP48Q86UV5 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC23.45■■□□□ 1.34
USP48Q86UV5 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC23.45■■□□□ 1.34
USP48Q86UV5 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC23.45■■□□□ 1.34
USP48Q86UV5 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
USP48Q86UV5 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC23.45■■□□□ 1.34
USP48Q86UV5 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC23.45■■□□□ 1.34
USP48Q86UV5 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC23.45■■□□□ 1.34
USP48Q86UV5 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC23.45■■□□□ 1.34
USP48Q86UV5 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC23.45■■□□□ 1.34
USP48Q86UV5 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC23.45■■□□□ 1.34
USP48Q86UV5 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC23.45■■□□□ 1.34
USP48Q86UV5 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
USP48Q86UV5 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC23.45■■□□□ 1.34
USP48Q86UV5 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC23.45■■□□□ 1.34
USP48Q86UV5 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC23.45■■□□□ 1.34
USP48Q86UV5 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC23.45■■□□□ 1.34
USP48Q86UV5 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC23.45■■□□□ 1.34
USP48Q86UV5 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
USP48Q86UV5 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC23.45■■□□□ 1.34
USP48Q86UV5 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
USP48Q86UV5 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
USP48Q86UV5 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC23.44■■□□□ 1.34
USP48Q86UV5 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
USP48Q86UV5 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
USP48Q86UV5 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
USP48Q86UV5 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC23.44■■□□□ 1.34
USP48Q86UV5 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC23.44■■□□□ 1.34
USP48Q86UV5 TUBB8P6-201ENST00000436895 1288 ntBASIC23.44■■□□□ 1.34
USP48Q86UV5 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC23.44■■□□□ 1.34
USP48Q86UV5 KRT18P16-201ENST00000510337 1294 ntBASIC23.44■■□□□ 1.34
USP48Q86UV5 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC23.44■■□□□ 1.34
USP48Q86UV5 CLEC4GP1-201ENST00000596555 870 ntBASIC23.44■■□□□ 1.34
USP48Q86UV5 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
USP48Q86UV5 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC23.44■■□□□ 1.34
USP48Q86UV5 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC23.44■■□□□ 1.34
USP48Q86UV5 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
USP48Q86UV5 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
USP48Q86UV5 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC23.44■■□□□ 1.34
USP48Q86UV5 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC23.44■■□□□ 1.34
USP48Q86UV5 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC23.44■■□□□ 1.34
USP48Q86UV5 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
USP48Q86UV5 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
USP48Q86UV5 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC23.44■■□□□ 1.34
USP48Q86UV5 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC23.44■■□□□ 1.34
USP48Q86UV5 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
USP48Q86UV5 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
USP48Q86UV5 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC23.43■■□□□ 1.34
USP48Q86UV5 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC23.43■■□□□ 1.34
USP48Q86UV5 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC23.43■■□□□ 1.34
USP48Q86UV5 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC23.43■■□□□ 1.34
USP48Q86UV5 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
USP48Q86UV5 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC23.43■■□□□ 1.34
USP48Q86UV5 BET1L-202ENST00000332865 533 ntTSL 5 BASIC23.43■■□□□ 1.34
USP48Q86UV5 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
USP48Q86UV5 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC23.43■■□□□ 1.34
USP48Q86UV5 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
USP48Q86UV5 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC23.43■■□□□ 1.34
USP48Q86UV5 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
USP48Q86UV5 HCG4P8-203ENST00000443049 980 ntBASIC23.43■■□□□ 1.34
USP48Q86UV5 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC23.43■■□□□ 1.34
USP48Q86UV5 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC23.43■■□□□ 1.34
USP48Q86UV5 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC23.43■■□□□ 1.34
USP48Q86UV5 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC23.43■■□□□ 1.34
USP48Q86UV5 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC23.43■■□□□ 1.34
USP48Q86UV5 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC23.43■■□□□ 1.34
USP48Q86UV5 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC23.43■■□□□ 1.34
USP48Q86UV5 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC23.43■■□□□ 1.34
USP48Q86UV5 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
USP48Q86UV5 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC23.43■■□□□ 1.34
USP48Q86UV5 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
USP48Q86UV5 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
USP48Q86UV5 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC23.43■■□□□ 1.34
USP48Q86UV5 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC23.43■■□□□ 1.34
USP48Q86UV5 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC23.43■■□□□ 1.34
USP48Q86UV5 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC23.43■■□□□ 1.34
USP48Q86UV5 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC23.43■■□□□ 1.34
USP48Q86UV5 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC23.42■■□□□ 1.34
USP48Q86UV5 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
USP48Q86UV5 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC23.42■■□□□ 1.34
USP48Q86UV5 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC23.42■■□□□ 1.34
USP48Q86UV5 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC23.42■■□□□ 1.34
USP48Q86UV5 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC23.42■■□□□ 1.34
USP48Q86UV5 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
USP48Q86UV5 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC23.42■■□□□ 1.34
USP48Q86UV5 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
USP48Q86UV5 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
USP48Q86UV5 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC23.42■■□□□ 1.34
USP48Q86UV5 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
USP48Q86UV5 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC23.42■■□□□ 1.34
USP48Q86UV5 AC004951.3-201ENST00000418645 1148 ntBASIC23.42■■□□□ 1.34
USP48Q86UV5 SLC25A1P2-201ENST00000430693 912 ntBASIC23.42■■□□□ 1.34
USP48Q86UV5 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC23.42■■□□□ 1.34
USP48Q86UV5 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC23.42■■□□□ 1.34
USP48Q86UV5 AC010653.2-201ENST00000623505 997 ntBASIC23.42■■□□□ 1.34
USP48Q86UV5 CLN6-214ENST00000636314 442 ntTSL 3 BASIC23.42■■□□□ 1.34
USP48Q86UV5 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms