Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
HDAC3O15379 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
HDAC3O15379 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC18.65■□□□□ 0.58
HDAC3O15379 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
HDAC3O15379 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
HDAC3O15379 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
HDAC3O15379 AP006587.1-201ENST00000534129 1502 ntBASIC18.64■□□□□ 0.58
HDAC3O15379 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
HDAC3O15379 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
HDAC3O15379 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
HDAC3O15379 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HDAC3O15379 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HDAC3O15379 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC18.64■□□□□ 0.57
HDAC3O15379 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC18.64■□□□□ 0.57
HDAC3O15379 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC18.64■□□□□ 0.57
HDAC3O15379 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC18.64■□□□□ 0.57
HDAC3O15379 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC18.64■□□□□ 0.57
HDAC3O15379 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HDAC3O15379 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HDAC3O15379 AL133373.2-201ENST00000623187 2828 ntBASIC18.64■□□□□ 0.57
HDAC3O15379 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
HDAC3O15379 AC124283.5-201ENST00000624661 1809 ntBASIC18.64■□□□□ 0.57
HDAC3O15379 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HDAC3O15379 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
HDAC3O15379 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
HDAC3O15379 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HDAC3O15379 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
HDAC3O15379 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HDAC3O15379 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC18.64■□□□□ 0.57
HDAC3O15379 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC18.64■□□□□ 0.57
HDAC3O15379 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
HDAC3O15379 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HDAC3O15379 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
HDAC3O15379 ANO7L1-203ENST00000602586 1720 ntBASIC18.63■□□□□ 0.57
HDAC3O15379 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
HDAC3O15379 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC18.63■□□□□ 0.57
HDAC3O15379 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HDAC3O15379 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
HDAC3O15379 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HDAC3O15379 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
HDAC3O15379 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HDAC3O15379 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC18.63■□□□□ 0.57
HDAC3O15379 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HDAC3O15379 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC18.63■□□□□ 0.57
HDAC3O15379 MFF-205ENST00000354503 1085 ntTSL 2 BASIC18.63■□□□□ 0.57
HDAC3O15379 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HDAC3O15379 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HDAC3O15379 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HDAC3O15379 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
HDAC3O15379 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HDAC3O15379 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
HDAC3O15379 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HDAC3O15379 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
HDAC3O15379 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
HDAC3O15379 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
HDAC3O15379 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
HDAC3O15379 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
HDAC3O15379 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
HDAC3O15379 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
HDAC3O15379 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HDAC3O15379 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
HDAC3O15379 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HDAC3O15379 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
HDAC3O15379 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HDAC3O15379 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
HDAC3O15379 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
HDAC3O15379 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC18.62■□□□□ 0.57
HDAC3O15379 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
HDAC3O15379 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HDAC3O15379 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
HDAC3O15379 RPS2P52-201ENST00000469610 820 ntBASIC18.62■□□□□ 0.57
HDAC3O15379 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC18.62■□□□□ 0.57
HDAC3O15379 MAX-217ENST00000557277 728 ntTSL 3 BASIC18.62■□□□□ 0.57
HDAC3O15379 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
HDAC3O15379 AC083906.6-201ENST00000641366 219 ntBASIC18.62■□□□□ 0.57
HDAC3O15379 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
HDAC3O15379 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
HDAC3O15379 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
HDAC3O15379 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HDAC3O15379 MKRN4P-201ENST00000444706 1521 ntBASIC18.62■□□□□ 0.57
HDAC3O15379 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HDAC3O15379 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
HDAC3O15379 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
HDAC3O15379 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
HDAC3O15379 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC18.62■□□□□ 0.57
HDAC3O15379 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HDAC3O15379 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
HDAC3O15379 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC18.62■□□□□ 0.57
HDAC3O15379 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HDAC3O15379 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HDAC3O15379 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
HDAC3O15379 NOC2LP2-201ENST00000407594 1944 ntBASIC18.61■□□□□ 0.57
HDAC3O15379 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HDAC3O15379 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC18.61■□□□□ 0.57
HDAC3O15379 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC18.61■□□□□ 0.57
HDAC3O15379 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
HDAC3O15379 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
HDAC3O15379 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
HDAC3O15379 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HDAC3O15379 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms