Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC16.29■□□□□ 0.2
SDCBPO00560 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SDCBPO00560 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SDCBPO00560 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
SDCBPO00560 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC16.29■□□□□ 0.2
SDCBPO00560 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SDCBPO00560 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SDCBPO00560 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SDCBPO00560 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SDCBPO00560 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SDCBPO00560 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SDCBPO00560 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
SDCBPO00560 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SDCBPO00560 AC018553.1-201ENST00000616682 1458 ntBASIC16.29■□□□□ 0.2
SDCBPO00560 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
SDCBPO00560 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
SDCBPO00560 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SDCBPO00560 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC16.28■□□□□ 0.2
SDCBPO00560 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SDCBPO00560 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SDCBPO00560 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC16.28■□□□□ 0.2
SDCBPO00560 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC16.28■□□□□ 0.2
SDCBPO00560 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SDCBPO00560 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
SDCBPO00560 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC16.28■□□□□ 0.2
SDCBPO00560 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC16.28■□□□□ 0.2
SDCBPO00560 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SDCBPO00560 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
SDCBPO00560 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
SDCBPO00560 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC16.28■□□□□ 0.2
SDCBPO00560 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SDCBPO00560 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SDCBPO00560 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
SDCBPO00560 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC16.28■□□□□ 0.2
SDCBPO00560 AC097658.1-201ENST00000475555 843 ntBASIC16.28■□□□□ 0.2
SDCBPO00560 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
SDCBPO00560 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SDCBPO00560 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC16.28■□□□□ 0.2
SDCBPO00560 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC16.28■□□□□ 0.2
SDCBPO00560 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC16.28■□□□□ 0.2
SDCBPO00560 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SDCBPO00560 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC16.28■□□□□ 0.2
SDCBPO00560 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC16.28■□□□□ 0.2
SDCBPO00560 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SDCBPO00560 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SDCBPO00560 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SDCBPO00560 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC16.28■□□□□ 0.2
SDCBPO00560 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SDCBPO00560 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC16.28■□□□□ 0.2
SDCBPO00560 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SDCBPO00560 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
SDCBPO00560 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC16.28■□□□□ 0.2
SDCBPO00560 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC16.28■□□□□ 0.2
SDCBPO00560 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC16.27■□□□□ 0.2
SDCBPO00560 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SDCBPO00560 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SDCBPO00560 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC16.27■□□□□ 0.2
SDCBPO00560 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC16.27■□□□□ 0.2
SDCBPO00560 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
SDCBPO00560 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC16.27■□□□□ 0.2
SDCBPO00560 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SDCBPO00560 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC16.27■□□□□ 0.2
SDCBPO00560 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SDCBPO00560 RER1-204ENST00000378518 522 ntTSL 3 BASIC16.27■□□□□ 0.2
SDCBPO00560 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SDCBPO00560 CALM3-202ENST00000391918 702 ntTSL 2 BASIC16.27■□□□□ 0.2
SDCBPO00560 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC16.27■□□□□ 0.2
SDCBPO00560 RHEB-204ENST00000472642 900 ntTSL 3 BASIC16.27■□□□□ 0.2
SDCBPO00560 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC16.27■□□□□ 0.2
SDCBPO00560 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SDCBPO00560 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC16.27■□□□□ 0.2
SDCBPO00560 AC005829.2-201ENST00000571422 1056 ntBASIC16.27■□□□□ 0.2
SDCBPO00560 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC16.27■□□□□ 0.2
SDCBPO00560 AL109923.1-201ENST00000618799 583 ntBASIC16.27■□□□□ 0.2
SDCBPO00560 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC16.27■□□□□ 0.2
SDCBPO00560 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC16.27■□□□□ 0.2
SDCBPO00560 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
SDCBPO00560 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SDCBPO00560 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SDCBPO00560 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SDCBPO00560 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
SDCBPO00560 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
SDCBPO00560 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
SDCBPO00560 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC16.27■□□□□ 0.19
SDCBPO00560 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC16.27■□□□□ 0.19
SDCBPO00560 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC16.27■□□□□ 0.19
SDCBPO00560 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC16.27■□□□□ 0.19
SDCBPO00560 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
SDCBPO00560 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
SDCBPO00560 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
SDCBPO00560 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC16.27■□□□□ 0.19
SDCBPO00560 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
SDCBPO00560 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
SDCBPO00560 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SDCBPO00560 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SDCBPO00560 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC16.26■□□□□ 0.19
SDCBPO00560 COMP-202ENST00000425807 2292 ntTSL 2 BASIC16.26■□□□□ 0.19
SDCBPO00560 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SDCBPO00560 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SDCBPO00560 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms