Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC19.2■□□□□ 0.66
TRIM49D1C9J1S8 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC19.2■□□□□ 0.66
TRIM49D1C9J1S8 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC19.2■□□□□ 0.66
TRIM49D1C9J1S8 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC19.2■□□□□ 0.66
TRIM49D1C9J1S8 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM49D1C9J1S8 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM49D1C9J1S8 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM49D1C9J1S8 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC19.2■□□□□ 0.66
TRIM49D1C9J1S8 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM49D1C9J1S8 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC19.2■□□□□ 0.66
TRIM49D1C9J1S8 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM49D1C9J1S8 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC19.2■□□□□ 0.66
TRIM49D1C9J1S8 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
TRIM49D1C9J1S8 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM49D1C9J1S8 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC19.19■□□□□ 0.66
TRIM49D1C9J1S8 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM49D1C9J1S8 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC19.19■□□□□ 0.66
TRIM49D1C9J1S8 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC19.19■□□□□ 0.66
TRIM49D1C9J1S8 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM49D1C9J1S8 AC018470.1-201ENST00000624790 3129 ntBASIC19.19■□□□□ 0.66
TRIM49D1C9J1S8 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM49D1C9J1S8 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM49D1C9J1S8 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM49D1C9J1S8 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM49D1C9J1S8 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
TRIM49D1C9J1S8 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM49D1C9J1S8 MIR663A-201ENST00000385250 93 ntBASIC19.19■□□□□ 0.66
TRIM49D1C9J1S8 CDCA4P2-201ENST00000441182 718 ntBASIC19.19■□□□□ 0.66
TRIM49D1C9J1S8 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
TRIM49D1C9J1S8 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC19.19■□□□□ 0.66
TRIM49D1C9J1S8 MIR5787-201ENST00000611784 55 ntBASIC19.19■□□□□ 0.66
TRIM49D1C9J1S8 AC079598.2-202ENST00000546624 1451 ntBASIC19.19■□□□□ 0.66
TRIM49D1C9J1S8 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC19.19■□□□□ 0.66
TRIM49D1C9J1S8 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC19.19■□□□□ 0.66
TRIM49D1C9J1S8 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC19.19■□□□□ 0.66
TRIM49D1C9J1S8 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC19.19■□□□□ 0.66
TRIM49D1C9J1S8 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM49D1C9J1S8 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM49D1C9J1S8 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
TRIM49D1C9J1S8 LETM1P2-201ENST00000597330 2178 ntBASIC19.19■□□□□ 0.66
TRIM49D1C9J1S8 AR-207ENST00000612010 3896 ntTSL 5 BASIC19.19■□□□□ 0.66
TRIM49D1C9J1S8 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
TRIM49D1C9J1S8 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM49D1C9J1S8 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM49D1C9J1S8 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM49D1C9J1S8 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM49D1C9J1S8 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
TRIM49D1C9J1S8 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM49D1C9J1S8 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM49D1C9J1S8 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM49D1C9J1S8 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM49D1C9J1S8 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM49D1C9J1S8 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC19.18■□□□□ 0.66
TRIM49D1C9J1S8 MIPEPP3-201ENST00000412105 444 ntBASIC19.18■□□□□ 0.66
TRIM49D1C9J1S8 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC19.18■□□□□ 0.66
TRIM49D1C9J1S8 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC19.18■□□□□ 0.66
TRIM49D1C9J1S8 RAP2CP1-201ENST00000605103 478 ntBASIC19.18■□□□□ 0.66
TRIM49D1C9J1S8 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
TRIM49D1C9J1S8 AL121906.2-201ENST00000621597 723 ntBASIC19.18■□□□□ 0.66
TRIM49D1C9J1S8 AC092437.1-201ENST00000624794 1048 ntBASIC19.18■□□□□ 0.66
TRIM49D1C9J1S8 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM49D1C9J1S8 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM49D1C9J1S8 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM49D1C9J1S8 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM49D1C9J1S8 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC19.18■□□□□ 0.66
TRIM49D1C9J1S8 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM49D1C9J1S8 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC19.18■□□□□ 0.66
TRIM49D1C9J1S8 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
TRIM49D1C9J1S8 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC19.18■□□□□ 0.66
TRIM49D1C9J1S8 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC19.18■□□□□ 0.66
TRIM49D1C9J1S8 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM49D1C9J1S8 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC19.18■□□□□ 0.66
TRIM49D1C9J1S8 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC19.18■□□□□ 0.66
TRIM49D1C9J1S8 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM49D1C9J1S8 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM49D1C9J1S8 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC19.17■□□□□ 0.66
TRIM49D1C9J1S8 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
TRIM49D1C9J1S8 FEM1AP3-201ENST00000403722 1741 ntBASIC19.17■□□□□ 0.66
TRIM49D1C9J1S8 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM49D1C9J1S8 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM49D1C9J1S8 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM49D1C9J1S8 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC19.17■□□□□ 0.66
TRIM49D1C9J1S8 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC19.17■□□□□ 0.66
TRIM49D1C9J1S8 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM49D1C9J1S8 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
TRIM49D1C9J1S8 METTL15-202ENST00000403099 795 ntTSL 5 BASIC19.17■□□□□ 0.66
TRIM49D1C9J1S8 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM49D1C9J1S8 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC19.17■□□□□ 0.66
TRIM49D1C9J1S8 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC19.17■□□□□ 0.66
TRIM49D1C9J1S8 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
TRIM49D1C9J1S8 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM49D1C9J1S8 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC19.17■□□□□ 0.66
TRIM49D1C9J1S8 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM49D1C9J1S8 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM49D1C9J1S8 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC19.17■□□□□ 0.66
TRIM49D1C9J1S8 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC19.17■□□□□ 0.66
TRIM49D1C9J1S8 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC19.17■□□□□ 0.66
TRIM49D1C9J1S8 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
TRIM49D1C9J1S8 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM49D1C9J1S8 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms