Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CHMP1AQ9HD42 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
CHMP1AQ9HD42 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CHMP1AQ9HD42 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC16.51■□□□□ 0.23
CHMP1AQ9HD42 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CHMP1AQ9HD42 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CHMP1AQ9HD42 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CHMP1AQ9HD42 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CHMP1AQ9HD42 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CHMP1AQ9HD42 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CHMP1AQ9HD42 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC16.5■□□□□ 0.23
CHMP1AQ9HD42 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CHMP1AQ9HD42 NXN-202ENST00000537628 1340 ntTSL 3 BASIC16.5■□□□□ 0.23
CHMP1AQ9HD42 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CHMP1AQ9HD42 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
CHMP1AQ9HD42 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC16.5■□□□□ 0.23
CHMP1AQ9HD42 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
CHMP1AQ9HD42 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
CHMP1AQ9HD42 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
CHMP1AQ9HD42 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CHMP1AQ9HD42 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CHMP1AQ9HD42 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
CHMP1AQ9HD42 LSM12P1-201ENST00000411836 588 ntBASIC16.5■□□□□ 0.23
CHMP1AQ9HD42 AC006015.1-201ENST00000429970 570 ntBASIC16.5■□□□□ 0.23
CHMP1AQ9HD42 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC16.5■□□□□ 0.23
CHMP1AQ9HD42 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC16.5■□□□□ 0.23
CHMP1AQ9HD42 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CHMP1AQ9HD42 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC16.5■□□□□ 0.23
CHMP1AQ9HD42 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CHMP1AQ9HD42 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CHMP1AQ9HD42 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CHMP1AQ9HD42 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CHMP1AQ9HD42 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CHMP1AQ9HD42 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
CHMP1AQ9HD42 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
CHMP1AQ9HD42 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CHMP1AQ9HD42 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CHMP1AQ9HD42 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CHMP1AQ9HD42 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
CHMP1AQ9HD42 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
CHMP1AQ9HD42 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC16.5■□□□□ 0.23
CHMP1AQ9HD42 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
CHMP1AQ9HD42 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHMP1AQ9HD42 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHMP1AQ9HD42 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC16.49■□□□□ 0.23
CHMP1AQ9HD42 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHMP1AQ9HD42 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHMP1AQ9HD42 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
CHMP1AQ9HD42 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHMP1AQ9HD42 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHMP1AQ9HD42 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC16.49■□□□□ 0.23
CHMP1AQ9HD42 APTR-203ENST00000430801 583 ntTSL 5 BASIC16.49■□□□□ 0.23
CHMP1AQ9HD42 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHMP1AQ9HD42 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CHMP1AQ9HD42 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CHMP1AQ9HD42 ISCU-212ENST00000547005 795 ntTSL 3 BASIC16.49■□□□□ 0.23
CHMP1AQ9HD42 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC16.49■□□□□ 0.23
CHMP1AQ9HD42 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHMP1AQ9HD42 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC16.49■□□□□ 0.23
CHMP1AQ9HD42 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC16.49■□□□□ 0.23
CHMP1AQ9HD42 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
CHMP1AQ9HD42 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHMP1AQ9HD42 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHMP1AQ9HD42 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHMP1AQ9HD42 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
CHMP1AQ9HD42 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHMP1AQ9HD42 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHMP1AQ9HD42 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHMP1AQ9HD42 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC16.49■□□□□ 0.23
CHMP1AQ9HD42 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC16.48■□□□□ 0.23
CHMP1AQ9HD42 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CHMP1AQ9HD42 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
CHMP1AQ9HD42 AC079598.2-202ENST00000546624 1451 ntBASIC16.48■□□□□ 0.23
CHMP1AQ9HD42 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CHMP1AQ9HD42 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
CHMP1AQ9HD42 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
CHMP1AQ9HD42 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
CHMP1AQ9HD42 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CHMP1AQ9HD42 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC16.48■□□□□ 0.23
CHMP1AQ9HD42 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CHMP1AQ9HD42 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC16.48■□□□□ 0.23
CHMP1AQ9HD42 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
CHMP1AQ9HD42 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC16.48■□□□□ 0.23
CHMP1AQ9HD42 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
CHMP1AQ9HD42 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CHMP1AQ9HD42 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC16.48■□□□□ 0.23
CHMP1AQ9HD42 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CHMP1AQ9HD42 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
CHMP1AQ9HD42 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CHMP1AQ9HD42 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
CHMP1AQ9HD42 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CHMP1AQ9HD42 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC16.48■□□□□ 0.23
CHMP1AQ9HD42 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC16.48■□□□□ 0.23
CHMP1AQ9HD42 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CHMP1AQ9HD42 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC16.48■□□□□ 0.23
CHMP1AQ9HD42 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CHMP1AQ9HD42 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CHMP1AQ9HD42 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CHMP1AQ9HD42 MAZ-216ENST00000616501 991 ntTSL 5 BASIC16.48■□□□□ 0.23
CHMP1AQ9HD42 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms