Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC28BQ9BUN5 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC18.65■□□□□ 0.58
CCDC28BQ9BUN5 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC28BQ9BUN5 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC18.65■□□□□ 0.58
CCDC28BQ9BUN5 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC28BQ9BUN5 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC18.65■□□□□ 0.58
CCDC28BQ9BUN5 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC28BQ9BUN5 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC28BQ9BUN5 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC18.65■□□□□ 0.58
CCDC28BQ9BUN5 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC28BQ9BUN5 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
CCDC28BQ9BUN5 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC28BQ9BUN5 AL512625.2-201ENST00000417533 625 ntBASIC18.65■□□□□ 0.58
CCDC28BQ9BUN5 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC18.65■□□□□ 0.58
CCDC28BQ9BUN5 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC18.65■□□□□ 0.58
CCDC28BQ9BUN5 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC18.65■□□□□ 0.58
CCDC28BQ9BUN5 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC18.65■□□□□ 0.58
CCDC28BQ9BUN5 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC18.65■□□□□ 0.58
CCDC28BQ9BUN5 PARP1-210ENST00000629232 477 ntTSL 5 BASIC18.65■□□□□ 0.58
CCDC28BQ9BUN5 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
CCDC28BQ9BUN5 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC28BQ9BUN5 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC28BQ9BUN5 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC28BQ9BUN5 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
CCDC28BQ9BUN5 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC28BQ9BUN5 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC18.65■□□□□ 0.58
CCDC28BQ9BUN5 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC18.65■□□□□ 0.58
CCDC28BQ9BUN5 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC28BQ9BUN5 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC28BQ9BUN5 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
CCDC28BQ9BUN5 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC18.64■□□□□ 0.58
CCDC28BQ9BUN5 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.58
CCDC28BQ9BUN5 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
CCDC28BQ9BUN5 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC28BQ9BUN5 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC28BQ9BUN5 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC28BQ9BUN5 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC18.64■□□□□ 0.57
CCDC28BQ9BUN5 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC18.64■□□□□ 0.57
CCDC28BQ9BUN5 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC18.64■□□□□ 0.57
CCDC28BQ9BUN5 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC28BQ9BUN5 AC231657.2-201ENST00000624556 255 ntBASIC18.64■□□□□ 0.57
CCDC28BQ9BUN5 UBQLN4P1-201ENST00000461599 1801 ntBASIC18.64■□□□□ 0.57
CCDC28BQ9BUN5 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC28BQ9BUN5 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC28BQ9BUN5 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC28BQ9BUN5 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC28BQ9BUN5 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC18.64■□□□□ 0.57
CCDC28BQ9BUN5 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC28BQ9BUN5 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC18.64■□□□□ 0.57
CCDC28BQ9BUN5 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC18.63■□□□□ 0.57
CCDC28BQ9BUN5 AC068880.1-201ENST00000507289 2297 ntBASIC18.63■□□□□ 0.57
CCDC28BQ9BUN5 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC18.63■□□□□ 0.57
CCDC28BQ9BUN5 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
CCDC28BQ9BUN5 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC28BQ9BUN5 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC28BQ9BUN5 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC18.63■□□□□ 0.57
CCDC28BQ9BUN5 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC18.63■□□□□ 0.57
CCDC28BQ9BUN5 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC18.63■□□□□ 0.57
CCDC28BQ9BUN5 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC28BQ9BUN5 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
CCDC28BQ9BUN5 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC18.63■□□□□ 0.57
CCDC28BQ9BUN5 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC18.63■□□□□ 0.57
CCDC28BQ9BUN5 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC28BQ9BUN5 AC011767.1-201ENST00000617410 1153 ntBASIC18.63■□□□□ 0.57
CCDC28BQ9BUN5 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC28BQ9BUN5 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC28BQ9BUN5 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC28BQ9BUN5 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC28BQ9BUN5 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC28BQ9BUN5 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC18.63■□□□□ 0.57
CCDC28BQ9BUN5 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC18.63■□□□□ 0.57
CCDC28BQ9BUN5 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC18.63■□□□□ 0.57
CCDC28BQ9BUN5 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC28BQ9BUN5 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC18.63■□□□□ 0.57
CCDC28BQ9BUN5 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC28BQ9BUN5 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC18.63■□□□□ 0.57
CCDC28BQ9BUN5 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC28BQ9BUN5 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC28BQ9BUN5 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC18.62■□□□□ 0.57
CCDC28BQ9BUN5 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC28BQ9BUN5 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC28BQ9BUN5 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC28BQ9BUN5 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
CCDC28BQ9BUN5 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC28BQ9BUN5 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC28BQ9BUN5 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC28BQ9BUN5 AC016769.1-201ENST00000409132 1010 ntBASIC18.62■□□□□ 0.57
CCDC28BQ9BUN5 AC073210.2-201ENST00000430369 194 ntBASIC18.62■□□□□ 0.57
CCDC28BQ9BUN5 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC18.62■□□□□ 0.57
CCDC28BQ9BUN5 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC18.62■□□□□ 0.57
CCDC28BQ9BUN5 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC28BQ9BUN5 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC28BQ9BUN5 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC28BQ9BUN5 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC28BQ9BUN5 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC28BQ9BUN5 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC18.62■□□□□ 0.57
CCDC28BQ9BUN5 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC28BQ9BUN5 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC28BQ9BUN5 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC28BQ9BUN5 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms