Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC22■■□□□ 1.11
SH3RF1Q7Z6J0 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC22■■□□□ 1.11
SH3RF1Q7Z6J0 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC22■■□□□ 1.11
SH3RF1Q7Z6J0 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC22■■□□□ 1.11
SH3RF1Q7Z6J0 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC22■■□□□ 1.11
SH3RF1Q7Z6J0 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC22■■□□□ 1.11
SH3RF1Q7Z6J0 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
SH3RF1Q7Z6J0 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC21.99■■□□□ 1.11
SH3RF1Q7Z6J0 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
SH3RF1Q7Z6J0 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC21.99■■□□□ 1.11
SH3RF1Q7Z6J0 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
SH3RF1Q7Z6J0 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC21.99■■□□□ 1.11
SH3RF1Q7Z6J0 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
SH3RF1Q7Z6J0 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC21.99■■□□□ 1.11
SH3RF1Q7Z6J0 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC21.99■■□□□ 1.11
SH3RF1Q7Z6J0 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
SH3RF1Q7Z6J0 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC21.99■■□□□ 1.11
SH3RF1Q7Z6J0 CRYGFP-201ENST00000418459 633 ntBASIC21.99■■□□□ 1.11
SH3RF1Q7Z6J0 TPM4P1-201ENST00000436100 807 ntBASIC21.99■■□□□ 1.11
SH3RF1Q7Z6J0 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC21.99■■□□□ 1.11
SH3RF1Q7Z6J0 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC21.99■■□□□ 1.11
SH3RF1Q7Z6J0 AC063952.2-201ENST00000498792 1227 ntBASIC21.99■■□□□ 1.11
SH3RF1Q7Z6J0 EGLN1P1-201ENST00000531623 762 ntBASIC21.99■■□□□ 1.11
SH3RF1Q7Z6J0 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC21.99■■□□□ 1.11
SH3RF1Q7Z6J0 AL032819.2-201ENST00000624543 2162 ntBASIC21.99■■□□□ 1.11
SH3RF1Q7Z6J0 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.11
SH3RF1Q7Z6J0 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
SH3RF1Q7Z6J0 AC087289.5-201ENST00000586076 3175 ntBASIC21.99■■□□□ 1.11
SH3RF1Q7Z6J0 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC21.98■■□□□ 1.11
SH3RF1Q7Z6J0 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
SH3RF1Q7Z6J0 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
SH3RF1Q7Z6J0 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC21.98■■□□□ 1.11
SH3RF1Q7Z6J0 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
SH3RF1Q7Z6J0 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC21.98■■□□□ 1.11
SH3RF1Q7Z6J0 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
SH3RF1Q7Z6J0 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC21.98■■□□□ 1.11
SH3RF1Q7Z6J0 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC21.98■■□□□ 1.11
SH3RF1Q7Z6J0 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
SH3RF1Q7Z6J0 TSPY14P-201ENST00000303979 915 ntBASIC21.98■■□□□ 1.11
SH3RF1Q7Z6J0 CALM3-202ENST00000391918 702 ntTSL 2 BASIC21.98■■□□□ 1.11
SH3RF1Q7Z6J0 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC21.98■■□□□ 1.11
SH3RF1Q7Z6J0 KRT18P56-201ENST00000507275 550 ntBASIC21.98■■□□□ 1.11
SH3RF1Q7Z6J0 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC21.98■■□□□ 1.11
SH3RF1Q7Z6J0 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
SH3RF1Q7Z6J0 ABBA01031674.1-201ENST00000635145 728 ntBASIC21.98■■□□□ 1.11
SH3RF1Q7Z6J0 AL031985.4-201ENST00000642138 673 ntBASIC21.98■■□□□ 1.11
SH3RF1Q7Z6J0 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC21.98■■□□□ 1.11
SH3RF1Q7Z6J0 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
SH3RF1Q7Z6J0 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
SH3RF1Q7Z6J0 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
SH3RF1Q7Z6J0 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
SH3RF1Q7Z6J0 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
SH3RF1Q7Z6J0 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC21.98■■□□□ 1.11
SH3RF1Q7Z6J0 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
SH3RF1Q7Z6J0 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
SH3RF1Q7Z6J0 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
SH3RF1Q7Z6J0 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC21.97■■□□□ 1.11
SH3RF1Q7Z6J0 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC21.97■■□□□ 1.11
SH3RF1Q7Z6J0 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC21.97■■□□□ 1.11
SH3RF1Q7Z6J0 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC21.97■■□□□ 1.11
SH3RF1Q7Z6J0 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
SH3RF1Q7Z6J0 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
SH3RF1Q7Z6J0 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC21.97■■□□□ 1.11
SH3RF1Q7Z6J0 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC21.97■■□□□ 1.11
SH3RF1Q7Z6J0 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
SH3RF1Q7Z6J0 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
SH3RF1Q7Z6J0 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
SH3RF1Q7Z6J0 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC21.97■■□□□ 1.11
SH3RF1Q7Z6J0 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC21.97■■□□□ 1.11
SH3RF1Q7Z6J0 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC21.97■■□□□ 1.11
SH3RF1Q7Z6J0 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
SH3RF1Q7Z6J0 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC21.97■■□□□ 1.11
SH3RF1Q7Z6J0 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC21.97■■□□□ 1.11
SH3RF1Q7Z6J0 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
SH3RF1Q7Z6J0 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
SH3RF1Q7Z6J0 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC21.97■■□□□ 1.11
SH3RF1Q7Z6J0 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
SH3RF1Q7Z6J0 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
SH3RF1Q7Z6J0 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC21.97■■□□□ 1.11
SH3RF1Q7Z6J0 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
SH3RF1Q7Z6J0 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC21.97■■□□□ 1.11
SH3RF1Q7Z6J0 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
SH3RF1Q7Z6J0 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
SH3RF1Q7Z6J0 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
SH3RF1Q7Z6J0 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC21.96■■□□□ 1.11
SH3RF1Q7Z6J0 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
SH3RF1Q7Z6J0 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
SH3RF1Q7Z6J0 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC21.96■■□□□ 1.11
SH3RF1Q7Z6J0 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC21.96■■□□□ 1.11
SH3RF1Q7Z6J0 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC21.96■■□□□ 1.11
SH3RF1Q7Z6J0 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC21.96■■□□□ 1.11
SH3RF1Q7Z6J0 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
SH3RF1Q7Z6J0 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
SH3RF1Q7Z6J0 AC117947.1-201ENST00000427448 529 ntBASIC21.96■■□□□ 1.11
SH3RF1Q7Z6J0 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC21.96■■□□□ 1.11
SH3RF1Q7Z6J0 PTGES2-AS1-201ENST00000443493 2100 ntBASIC21.96■■□□□ 1.11
SH3RF1Q7Z6J0 BX664615.1-201ENST00000443558 458 ntBASIC21.96■■□□□ 1.11
SH3RF1Q7Z6J0 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC21.96■■□□□ 1.11
SH3RF1Q7Z6J0 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC21.96■■□□□ 1.11
SH3RF1Q7Z6J0 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC21.96■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms