Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC13.41□□□□□ -0.26
CKS1BP61024 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC13.41□□□□□ -0.26
CKS1BP61024 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC13.41□□□□□ -0.26
CKS1BP61024 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC13.41□□□□□ -0.26
CKS1BP61024 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC13.41□□□□□ -0.26
CKS1BP61024 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CKS1BP61024 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC13.41□□□□□ -0.26
CKS1BP61024 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CKS1BP61024 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CKS1BP61024 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CKS1BP61024 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
CKS1BP61024 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
CKS1BP61024 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
CKS1BP61024 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CKS1BP61024 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
CKS1BP61024 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CKS1BP61024 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CKS1BP61024 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
CKS1BP61024 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC13.4□□□□□ -0.26
CKS1BP61024 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
CKS1BP61024 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CKS1BP61024 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CKS1BP61024 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC13.4□□□□□ -0.26
CKS1BP61024 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
CKS1BP61024 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CKS1BP61024 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC13.4□□□□□ -0.26
CKS1BP61024 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC13.4□□□□□ -0.26
CKS1BP61024 NALT1-201ENST00000429224 738 ntTSL 5 BASIC13.4□□□□□ -0.26
CKS1BP61024 CDV3P1-201ENST00000471403 739 ntBASIC13.4□□□□□ -0.26
CKS1BP61024 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC13.4□□□□□ -0.26
CKS1BP61024 CCDC92B-201ENST00000575506 885 ntBASIC13.4□□□□□ -0.26
CKS1BP61024 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CKS1BP61024 CEP83-AS1-201ENST00000623122 2482 ntBASIC13.4□□□□□ -0.26
CKS1BP61024 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
CKS1BP61024 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC13.4□□□□□ -0.26
CKS1BP61024 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CKS1BP61024 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CKS1BP61024 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
CKS1BP61024 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CKS1BP61024 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC13.4□□□□□ -0.26
CKS1BP61024 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC13.4□□□□□ -0.26
CKS1BP61024 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC13.4□□□□□ -0.27
CKS1BP61024 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC13.4□□□□□ -0.27
CKS1BP61024 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.27
CKS1BP61024 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC13.4□□□□□ -0.27
CKS1BP61024 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.27
CKS1BP61024 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
CKS1BP61024 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
CKS1BP61024 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CKS1BP61024 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC13.39□□□□□ -0.27
CKS1BP61024 KRT8P36-201ENST00000489121 1440 ntBASIC13.39□□□□□ -0.27
CKS1BP61024 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC13.39□□□□□ -0.27
CKS1BP61024 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
CKS1BP61024 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
CKS1BP61024 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CKS1BP61024 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC13.39□□□□□ -0.27
CKS1BP61024 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC13.39□□□□□ -0.27
CKS1BP61024 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CKS1BP61024 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC13.39□□□□□ -0.27
CKS1BP61024 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CKS1BP61024 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CKS1BP61024 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC13.39□□□□□ -0.27
CKS1BP61024 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC13.39□□□□□ -0.27
CKS1BP61024 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC13.39□□□□□ -0.27
CKS1BP61024 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
CKS1BP61024 AP001160.3-201ENST00000601484 763 ntBASIC13.39□□□□□ -0.27
CKS1BP61024 AC104187.1-201ENST00000607510 612 ntBASIC13.39□□□□□ -0.27
CKS1BP61024 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC13.39□□□□□ -0.27
CKS1BP61024 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC13.39□□□□□ -0.27
CKS1BP61024 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
CKS1BP61024 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC13.39□□□□□ -0.27
CKS1BP61024 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
CKS1BP61024 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CKS1BP61024 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CKS1BP61024 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CKS1BP61024 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC13.39□□□□□ -0.27
CKS1BP61024 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
CKS1BP61024 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CKS1BP61024 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CKS1BP61024 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CKS1BP61024 CICP6-201ENST00000457191 2729 ntBASIC13.39□□□□□ -0.27
CKS1BP61024 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CKS1BP61024 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
CKS1BP61024 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CKS1BP61024 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CKS1BP61024 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CKS1BP61024 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
CKS1BP61024 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC13.38□□□□□ -0.27
CKS1BP61024 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CKS1BP61024 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CKS1BP61024 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
CKS1BP61024 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC13.38□□□□□ -0.27
CKS1BP61024 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
CKS1BP61024 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
CKS1BP61024 C8orf49-201ENST00000525043 1968 ntBASIC13.38□□□□□ -0.27
CKS1BP61024 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CKS1BP61024 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC13.38□□□□□ -0.27
CKS1BP61024 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
CKS1BP61024 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC13.38□□□□□ -0.27
CKS1BP61024 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms