Protein–RNA interactions for Protein: Q96RI1

NR1H4, Bile acid receptor, humanhuman

Predicted RBP Predictions only

Length 486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H4Q96RI1 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
NR1H4Q96RI1 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC18.11■□□□□ 0.49
NR1H4Q96RI1 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
NR1H4Q96RI1 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
NR1H4Q96RI1 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
NR1H4Q96RI1 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
NR1H4Q96RI1 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC18.11■□□□□ 0.49
NR1H4Q96RI1 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
NR1H4Q96RI1 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC18.11■□□□□ 0.49
NR1H4Q96RI1 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
NR1H4Q96RI1 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
NR1H4Q96RI1 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC18.1■□□□□ 0.49
NR1H4Q96RI1 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
NR1H4Q96RI1 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
NR1H4Q96RI1 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
NR1H4Q96RI1 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
NR1H4Q96RI1 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
NR1H4Q96RI1 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
NR1H4Q96RI1 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC18.1■□□□□ 0.49
NR1H4Q96RI1 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
NR1H4Q96RI1 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
NR1H4Q96RI1 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC18.1■□□□□ 0.49
NR1H4Q96RI1 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
NR1H4Q96RI1 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
NR1H4Q96RI1 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
NR1H4Q96RI1 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
NR1H4Q96RI1 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
NR1H4Q96RI1 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC18.1■□□□□ 0.49
NR1H4Q96RI1 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
NR1H4Q96RI1 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
NR1H4Q96RI1 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC18.1■□□□□ 0.49
NR1H4Q96RI1 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
NR1H4Q96RI1 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC18.1■□□□□ 0.49
NR1H4Q96RI1 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC18.1■□□□□ 0.49
NR1H4Q96RI1 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC18.1■□□□□ 0.49
NR1H4Q96RI1 SF1-220ENST00000626028 704 ntTSL 2 BASIC18.1■□□□□ 0.49
NR1H4Q96RI1 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
NR1H4Q96RI1 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
NR1H4Q96RI1 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC18.1■□□□□ 0.49
NR1H4Q96RI1 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
NR1H4Q96RI1 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC18.1■□□□□ 0.49
NR1H4Q96RI1 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
NR1H4Q96RI1 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
NR1H4Q96RI1 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
NR1H4Q96RI1 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
NR1H4Q96RI1 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
NR1H4Q96RI1 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
NR1H4Q96RI1 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
NR1H4Q96RI1 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC18.09■□□□□ 0.49
NR1H4Q96RI1 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
NR1H4Q96RI1 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
NR1H4Q96RI1 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC18.09■□□□□ 0.49
NR1H4Q96RI1 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
NR1H4Q96RI1 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
NR1H4Q96RI1 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
NR1H4Q96RI1 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC18.09■□□□□ 0.49
NR1H4Q96RI1 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
NR1H4Q96RI1 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
NR1H4Q96RI1 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC18.09■□□□□ 0.49
NR1H4Q96RI1 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC18.09■□□□□ 0.49
NR1H4Q96RI1 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
NR1H4Q96RI1 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC18.09■□□□□ 0.49
NR1H4Q96RI1 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC18.09■□□□□ 0.49
NR1H4Q96RI1 PTMA-205ENST00000410064 814 ntTSL 2 BASIC18.09■□□□□ 0.49
NR1H4Q96RI1 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
NR1H4Q96RI1 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
NR1H4Q96RI1 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
NR1H4Q96RI1 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
NR1H4Q96RI1 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
NR1H4Q96RI1 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC18.09■□□□□ 0.49
NR1H4Q96RI1 OR6D1P-202ENST00000641007 5290 ntBASIC18.09■□□□□ 0.49
NR1H4Q96RI1 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
NR1H4Q96RI1 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
NR1H4Q96RI1 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
NR1H4Q96RI1 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
NR1H4Q96RI1 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
NR1H4Q96RI1 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC18.08■□□□□ 0.49
NR1H4Q96RI1 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC18.08■□□□□ 0.49
NR1H4Q96RI1 AL162741.1-201ENST00000565563 1558 ntBASIC18.08■□□□□ 0.49
NR1H4Q96RI1 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
NR1H4Q96RI1 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
NR1H4Q96RI1 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.49
NR1H4Q96RI1 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
NR1H4Q96RI1 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
NR1H4Q96RI1 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
NR1H4Q96RI1 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
NR1H4Q96RI1 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
NR1H4Q96RI1 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
NR1H4Q96RI1 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
NR1H4Q96RI1 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
NR1H4Q96RI1 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC18.08■□□□□ 0.49
NR1H4Q96RI1 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
NR1H4Q96RI1 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC18.08■□□□□ 0.48
NR1H4Q96RI1 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
NR1H4Q96RI1 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC18.08■□□□□ 0.48
NR1H4Q96RI1 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
NR1H4Q96RI1 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC18.08■□□□□ 0.48
NR1H4Q96RI1 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
NR1H4Q96RI1 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC18.08■□□□□ 0.48
NR1H4Q96RI1 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC18.08■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 60.9 ms