Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
LINC00643Q86TS7 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC12.04□□□□□ -0.48
LINC00643Q86TS7 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
LINC00643Q86TS7 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC12.04□□□□□ -0.48
LINC00643Q86TS7 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
LINC00643Q86TS7 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
LINC00643Q86TS7 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
LINC00643Q86TS7 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC12.04□□□□□ -0.48
LINC00643Q86TS7 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
LINC00643Q86TS7 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
LINC00643Q86TS7 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
LINC00643Q86TS7 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
LINC00643Q86TS7 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
LINC00643Q86TS7 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC12.04□□□□□ -0.48
LINC00643Q86TS7 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
LINC00643Q86TS7 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
LINC00643Q86TS7 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
LINC00643Q86TS7 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC12.04□□□□□ -0.48
LINC00643Q86TS7 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC12.04□□□□□ -0.48
LINC00643Q86TS7 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
LINC00643Q86TS7 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC12.04□□□□□ -0.48
LINC00643Q86TS7 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC12.04□□□□□ -0.48
LINC00643Q86TS7 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
LINC00643Q86TS7 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
LINC00643Q86TS7 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC12.03□□□□□ -0.48
LINC00643Q86TS7 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
LINC00643Q86TS7 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC12.03□□□□□ -0.48
LINC00643Q86TS7 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC12.03□□□□□ -0.48
LINC00643Q86TS7 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
LINC00643Q86TS7 CD37-204ENST00000535669 1674 ntTSL 2 BASIC12.03□□□□□ -0.48
LINC00643Q86TS7 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
LINC00643Q86TS7 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC12.03□□□□□ -0.48
LINC00643Q86TS7 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC12.03□□□□□ -0.48
LINC00643Q86TS7 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
LINC00643Q86TS7 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
LINC00643Q86TS7 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
LINC00643Q86TS7 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
LINC00643Q86TS7 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
LINC00643Q86TS7 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
LINC00643Q86TS7 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
LINC00643Q86TS7 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC12.03□□□□□ -0.48
LINC00643Q86TS7 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC12.03□□□□□ -0.48
LINC00643Q86TS7 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC12.03□□□□□ -0.48
LINC00643Q86TS7 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
LINC00643Q86TS7 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
LINC00643Q86TS7 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
LINC00643Q86TS7 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
LINC00643Q86TS7 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
LINC00643Q86TS7 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC12.03□□□□□ -0.48
LINC00643Q86TS7 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
LINC00643Q86TS7 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
LINC00643Q86TS7 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
LINC00643Q86TS7 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC12.03□□□□□ -0.48
LINC00643Q86TS7 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
LINC00643Q86TS7 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
LINC00643Q86TS7 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC12.03□□□□□ -0.48
LINC00643Q86TS7 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC12.03□□□□□ -0.48
LINC00643Q86TS7 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC12.02□□□□□ -0.48
LINC00643Q86TS7 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.48
LINC00643Q86TS7 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
LINC00643Q86TS7 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.48
LINC00643Q86TS7 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.48
LINC00643Q86TS7 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC12.02□□□□□ -0.48
LINC00643Q86TS7 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.48
LINC00643Q86TS7 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.48
LINC00643Q86TS7 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC12.02□□□□□ -0.48
LINC00643Q86TS7 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.48
LINC00643Q86TS7 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
LINC00643Q86TS7 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
LINC00643Q86TS7 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
LINC00643Q86TS7 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC12.02□□□□□ -0.49
LINC00643Q86TS7 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC12.02□□□□□ -0.49
LINC00643Q86TS7 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC12.02□□□□□ -0.49
LINC00643Q86TS7 AL162741.1-201ENST00000565563 1558 ntBASIC12.02□□□□□ -0.49
LINC00643Q86TS7 BX119927.1-201ENST00000636596 1552 ntBASIC12.02□□□□□ -0.49
LINC00643Q86TS7 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC12.02□□□□□ -0.49
LINC00643Q86TS7 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
LINC00643Q86TS7 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.49
LINC00643Q86TS7 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
LINC00643Q86TS7 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
LINC00643Q86TS7 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC12.02□□□□□ -0.49
LINC00643Q86TS7 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
LINC00643Q86TS7 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
LINC00643Q86TS7 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC12.02□□□□□ -0.49
LINC00643Q86TS7 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
LINC00643Q86TS7 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
LINC00643Q86TS7 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
LINC00643Q86TS7 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
LINC00643Q86TS7 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
LINC00643Q86TS7 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
LINC00643Q86TS7 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC12.01□□□□□ -0.49
LINC00643Q86TS7 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC12.01□□□□□ -0.49
LINC00643Q86TS7 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC12.01□□□□□ -0.49
LINC00643Q86TS7 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
LINC00643Q86TS7 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC12.01□□□□□ -0.49
LINC00643Q86TS7 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
LINC00643Q86TS7 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
LINC00643Q86TS7 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
LINC00643Q86TS7 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
LINC00643Q86TS7 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms