Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AL390719.1-204ENST00000412397 1219 ntBASIC20.14■□□□□ 0.81
LIG3P49916 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
LIG3P49916 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC20.14■□□□□ 0.81
LIG3P49916 IRX5-204ENST00000560154 879 ntTSL 5 BASIC20.14■□□□□ 0.81
LIG3P49916 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC20.14■□□□□ 0.81
LIG3P49916 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC20.14■□□□□ 0.81
LIG3P49916 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.81
LIG3P49916 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
LIG3P49916 AC073648.6-201ENST00000641589 218 ntBASIC20.14■□□□□ 0.81
LIG3P49916 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC20.14■□□□□ 0.81
LIG3P49916 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
LIG3P49916 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
LIG3P49916 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
LIG3P49916 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
LIG3P49916 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC20.14■□□□□ 0.81
LIG3P49916 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
LIG3P49916 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
LIG3P49916 AC012313.1-201ENST00000593393 3059 ntBASIC20.13■□□□□ 0.81
LIG3P49916 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC20.13■□□□□ 0.81
LIG3P49916 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC20.13■□□□□ 0.81
LIG3P49916 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
LIG3P49916 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
LIG3P49916 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
LIG3P49916 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC20.13■□□□□ 0.81
LIG3P49916 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
LIG3P49916 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
LIG3P49916 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
LIG3P49916 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC20.13■□□□□ 0.81
LIG3P49916 AC008687.6-201ENST00000596318 630 ntBASIC20.13■□□□□ 0.81
LIG3P49916 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC20.13■□□□□ 0.81
LIG3P49916 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC20.13■□□□□ 0.81
LIG3P49916 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC20.13■□□□□ 0.81
LIG3P49916 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
LIG3P49916 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
LIG3P49916 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC20.12■□□□□ 0.81
LIG3P49916 PTGES2-AS1-201ENST00000443493 2100 ntBASIC20.12■□□□□ 0.81
LIG3P49916 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC20.12■□□□□ 0.81
LIG3P49916 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
LIG3P49916 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
LIG3P49916 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
LIG3P49916 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
LIG3P49916 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC20.12■□□□□ 0.81
LIG3P49916 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC20.12■□□□□ 0.81
LIG3P49916 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC20.12■□□□□ 0.81
LIG3P49916 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
LIG3P49916 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
LIG3P49916 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
LIG3P49916 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
LIG3P49916 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC20.12■□□□□ 0.81
LIG3P49916 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC20.12■□□□□ 0.81
LIG3P49916 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
LIG3P49916 KLF2-202ENST00000592003 564 ntTSL 3 BASIC20.12■□□□□ 0.81
LIG3P49916 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
LIG3P49916 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
LIG3P49916 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC20.12■□□□□ 0.81
LIG3P49916 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
LIG3P49916 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
LIG3P49916 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC20.12■□□□□ 0.81
LIG3P49916 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
LIG3P49916 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC20.12■□□□□ 0.81
LIG3P49916 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC20.12■□□□□ 0.81
LIG3P49916 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC20.12■□□□□ 0.81
LIG3P49916 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC20.11■□□□□ 0.81
LIG3P49916 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
LIG3P49916 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC20.11■□□□□ 0.81
LIG3P49916 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC20.11■□□□□ 0.81
LIG3P49916 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
LIG3P49916 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC20.11■□□□□ 0.81
LIG3P49916 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
LIG3P49916 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
LIG3P49916 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
LIG3P49916 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC20.11■□□□□ 0.81
LIG3P49916 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
LIG3P49916 RER1-204ENST00000378518 522 ntTSL 3 BASIC20.11■□□□□ 0.81
LIG3P49916 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
LIG3P49916 KRT17P3-201ENST00000420566 1262 ntBASIC20.11■□□□□ 0.81
LIG3P49916 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC20.11■□□□□ 0.81
LIG3P49916 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC20.11■□□□□ 0.81
LIG3P49916 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC20.11■□□□□ 0.81
LIG3P49916 AC023632.3-201ENST00000521633 145 ntBASIC20.11■□□□□ 0.81
LIG3P49916 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC20.11■□□□□ 0.81
LIG3P49916 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
LIG3P49916 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
LIG3P49916 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
LIG3P49916 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
LIG3P49916 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
LIG3P49916 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
LIG3P49916 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
LIG3P49916 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
LIG3P49916 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
LIG3P49916 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
LIG3P49916 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
LIG3P49916 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
LIG3P49916 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
LIG3P49916 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
LIG3P49916 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC20.1■□□□□ 0.81
LIG3P49916 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC20.1■□□□□ 0.81
LIG3P49916 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
LIG3P49916 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
LIG3P49916 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms