Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 UBE2D3-210ENST00000453744 3990 ntAPPRIS ALT1 TSL 1 (best) BASIC13.99□□□□□ -0.171e-8■■□□□ 14.5
YBX3P16989 UBE2D3-209ENST00000394804 4166 ntAPPRIS ALT1 TSL 5 BASIC12.13□□□□□ -0.471e-8■■□□□ 14.5
YBX3P16989 UBE2D3-208ENST00000394803 2227 ntAPPRIS ALT1 TSL 1 (best) BASIC10.17□□□□□ -0.781e-8■■□□□ 14.5
YBX3P16989 UBE2D3-203ENST00000343106 2389 ntAPPRIS P4 TSL 2 BASIC10.09□□□□□ -0.791e-8■■□□□ 14.5
YBX3P16989 UBE2D3-224ENST00000508474 4819 ntTSL 27.31□□□□□ -1.241e-8■■□□□ 14.5
YBX3P16989 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC4.54□□□□□ -1.681e-8■■□□□ 14.5
YBX3P16989 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC33.61■■■□□ 2.971e-6■■□□□ 14.5
YBX3P16989 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC33.61■■■□□ 2.971e-6■■□□□ 14.5
YBX3P16989 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC31.34■■■□□ 2.611e-6■■□□□ 14.5
YBX3P16989 CDKN3-208ENST00000555837 689 ntTSL 229.37■■■□□ 2.291e-6■■□□□ 14.5
YBX3P16989 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC27.79■■■□□ 2.041e-6■■□□□ 14.5
YBX3P16989 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC25.75■■□□□ 1.711e-6■■□□□ 14.5
YBX3P16989 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC8.82□□□□□ -11e-6■■□□□ 14.5
YBX3P16989 CDKN3-203ENST00000395577 637 ntTSL 5 BASIC7.52□□□□□ -1.211e-6■■□□□ 14.5
YBX3P16989 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC6.59□□□□□ -1.351e-6■■□□□ 14.5
YBX3P16989 CDKN3-201ENST00000216414 373 ntTSL 1 (best)6.42□□□□□ -1.381e-6■■□□□ 14.5
YBX3P16989 CDKN3-210ENST00000556305 712 ntTSL 36.07□□□□□ -1.441e-6■■□□□ 14.5
YBX3P16989 BCOR-212ENST00000615339 2618 ntTSL 5 BASIC11.53□□□□□ -0.562e-8■■□□□ 14.5
YBX3P16989 BCOR-211ENST00000490976 3480 ntTSL 29.34□□□□□ -0.912e-8■■□□□ 14.5
YBX3P16989 PSMF1-204ENST00000381898 642 ntTSL 317.65■□□□□ 0.424e-13■■□□□ 14.5
YBX3P16989 PSMF1-210ENST00000484891 4030 ntTSL 28.29□□□□□ -1.084e-13■■□□□ 14.5
YBX3P16989 CLTC-207ENST00000483176 760 ntTSL 36.46□□□□□ -1.387e-10■■□□□ 14.5
YBX3P16989 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC17.71■□□□□ 0.431e-10■■□□□ 14.5
YBX3P16989 METAP2-203ENST00000535095 2431 ntTSL 216.08■□□□□ 0.171e-10■■□□□ 14.5
YBX3P16989 METAP2-209ENST00000550777 1779 ntTSL 5 BASIC14.78□□□□□ -0.041e-10■■□□□ 14.5
YBX3P16989 METAP2-201ENST00000261220 1836 ntTSL 2 BASIC13.13□□□□□ -0.311e-10■■□□□ 14.5
YBX3P16989 METAP2-210ENST00000551840 1874 ntAPPRIS ALT1 TSL 5 BASIC12.25□□□□□ -0.451e-10■■□□□ 14.5
YBX3P16989 METAP2-202ENST00000323666 3601 ntAPPRIS P3 TSL 1 (best) BASIC9.84□□□□□ -0.831e-10■■□□□ 14.5
YBX3P16989 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.761e-7■■□□□ 14.5
YBX3P16989 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC7.69□□□□□ -1.181e-7■■□□□ 14.5
YBX3P16989 ATP5A1-204ENST00000586523 4547 nt6.51□□□□□ -1.377e-11■■□□□ 14.5
YBX3P16989 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.768e-9■■□□□ 14.5
YBX3P16989 RPS5-207ENST00000599232 1747 nt20.53■□□□□ 0.881e-55■■□□□ 14.5
YBX3P16989 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.671e-11■■□□□ 14.5
YBX3P16989 SLC35B1-217ENST00000513508 631 ntTSL 215.72■□□□□ 0.112e-7■■□□□ 14.5
YBX3P16989 CHST15-205ENST00000628426 3553 ntTSL 2 BASIC12.81□□□□□ -0.362e-7■■□□□ 14.5
YBX3P16989 CHST15-201ENST00000346248 4810 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.362e-7■■□□□ 14.5
YBX3P16989 CHST15-202ENST00000435907 4820 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.452e-7■■□□□ 14.5
YBX3P16989 RUVBL2-203ENST00000594017 959 ntTSL 226.39■■□□□ 1.822e-6■■□□□ 14.5
YBX3P16989 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.213e-8■■□□□ 14.5
YBX3P16989 MYH9-201ENST00000216181 7501 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.549e-7■■□□□ 14.5
YBX3P16989 SEC14L1-223ENST00000589202 484 ntTSL 319.52■□□□□ 0.724e-6■■□□□ 14.5
YBX3P16989 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC28.24■■■□□ 2.115e-7■■□□□ 14.5
YBX3P16989 PUSL1-203ENST00000467712 877 ntTSL 526.93■■□□□ 1.93e-8■■□□□ 14.5
YBX3P16989 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.93e-8■■□□□ 14.5
YBX3P16989 BID-208ENST00000550946 1394 ntTSL 1 (best)25.86■■□□□ 1.735e-7■■□□□ 14.5
YBX3P16989 PUSL1-204ENST00000470520 769 ntTSL 524.84■■□□□ 1.573e-8■■□□□ 14.5
YBX3P16989 BID-206ENST00000473439 638 ntTSL 224.68■■□□□ 1.545e-7■■□□□ 14.5
YBX3P16989 PUSL1-202ENST00000463758 940 ntTSL 223.79■■□□□ 1.43e-8■■□□□ 14.5
YBX3P16989 BID-203ENST00000399765 1879 ntTSL 2 BASIC23.09■■□□□ 1.295e-7■■□□□ 14.5
YBX3P16989 BID-212ENST00000614949 1988 ntTSL 5 BASIC22.53■■□□□ 1.25e-7■■□□□ 14.5
YBX3P16989 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.125e-7■■□□□ 14.5
YBX3P16989 BID-204ENST00000399767 2129 ntTSL 2 BASIC20.74■□□□□ 0.915e-7■■□□□ 14.5
YBX3P16989 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.785e-7■■□□□ 14.5
YBX3P16989 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC18.86■□□□□ 0.615e-7■■□□□ 14.5
YBX3P16989 BID-209ENST00000551952 700 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.455e-7■■□□□ 14.5
YBX3P16989 BID-213ENST00000615414 2236 ntTSL 5 BASIC17.15■□□□□ 0.345e-7■■□□□ 14.5
YBX3P16989 BID-211ENST00000611040 419 ntTSL 1 (best) BASIC16.02■□□□□ 0.165e-7■■□□□ 14.5
YBX3P16989 SF3B3-202ENST00000562722 881 ntTSL 217.89■□□□□ 0.456e-15■■□□□ 14.5
YBX3P16989 FBXW11-207ENST00000519693 758 ntTSL 233.51■■■□□ 2.957e-7■■□□□ 14.5
YBX3P16989 FBXW11-208ENST00000520376 686 ntTSL 231.72■■■□□ 2.677e-7■■□□□ 14.5
YBX3P16989 FBXW11-204ENST00000517395 636 ntTSL 329.85■■■□□ 2.377e-7■■□□□ 14.5
YBX3P16989 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.254e-9■■□□□ 14.5
YBX3P16989 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.254e-9■■□□□ 14.5
YBX3P16989 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC28.92■■■□□ 2.229e-6■■□□□ 14.5
YBX3P16989 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC19.59■□□□□ 0.739e-6■■□□□ 14.5
YBX3P16989 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.49e-6■■□□□ 14.5
YBX3P16989 AGFG1-203ENST00000409171 1783 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.169e-6■■□□□ 14.5
YBX3P16989 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC15.91■□□□□ 0.149e-6■■□□□ 14.5
YBX3P16989 HPS1-205ENST00000414009 857 ntTSL 218.59■□□□□ 0.571e-7■■□□□ 14.5
YBX3P16989 HPS1-211ENST00000478087 971 ntTSL 517.5■□□□□ 0.391e-7■■□□□ 14.5
YBX3P16989 HPS1-209ENST00000470095 801 ntTSL 517.11■□□□□ 0.331e-7■■□□□ 14.5
YBX3P16989 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.154e-6■■□□□ 14.5
YBX3P16989 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC20.66■□□□□ 0.94e-6■■□□□ 14.5
YBX3P16989 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.644e-6■■□□□ 14.5
YBX3P16989 ACOT7-207ENST00000473466 868 ntTSL 518.97■□□□□ 0.634e-6■■□□□ 14.5
YBX3P16989 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC18.63■□□□□ 0.576e-8■■□□□ 14.5
YBX3P16989 GOLGA2-214ENST00000611957 4259 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.536e-8■■□□□ 14.5
YBX3P16989 GOLGA2-201ENST00000421699 4260 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.66e-8■■□□□ 14.5
YBX3P16989 RPLP0-210ENST00000547475 792 ntTSL 312.33□□□□□ -0.441e-88■■□□□ 14.5
YBX3P16989 RPLP0-207ENST00000547173 864 ntTSL 311.34□□□□□ -0.591e-88■■□□□ 14.5
YBX3P16989 HEPH-201ENST00000336279 4228 ntTSL 1 (best) BASIC8.9□□□□□ -0.991e-6■■□□□ 14.5
YBX3P16989 HEPH-202ENST00000343002 4854 ntAPPRIS ALT2 TSL 1 (best) BASIC8.5□□□□□ -1.051e-6■■□□□ 14.5
YBX3P16989 HEPH-209ENST00000519389 6013 ntAPPRIS P3 TSL 1 (best) BASIC7.99□□□□□ -1.131e-6■■□□□ 14.5
YBX3P16989 HEPH-203ENST00000419594 3694 ntTSL 1 (best) BASIC7.73□□□□□ -1.171e-6■■□□□ 14.5
YBX3P16989 HEPH-206ENST00000441993 4310 ntAPPRIS ALT2 TSL 1 (best) BASIC6.88□□□□□ -1.311e-6■■□□□ 14.5
YBX3P16989 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC32.71■■■□□ 2.832e-11■■□□□ 14.5
YBX3P16989 CACYBP-207ENST00000473925 804 ntTSL 228.44■■■□□ 2.141e-6■■□□□ 14.5
YBX3P16989 TAF10-202ENST00000527248 425 ntTSL 326.09■■□□□ 1.772e-11■■□□□ 14.5
YBX3P16989 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC25.63■■□□□ 1.691e-6■■□□□ 14.5
YBX3P16989 TAF10-203ENST00000531760 502 ntTSL 522.45■■□□□ 1.182e-11■■□□□ 14.5
YBX3P16989 TAF10-205ENST00000616342 5392 ntTSL 1 (best)13.94□□□□□ -0.182e-11■■□□□ 14.5
YBX3P16989 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.123e-9■■□□□ 14.4
YBX3P16989 ST6GAL1-215ENST00000457772 3947 ntTSL 5 BASIC12.69□□□□□ -0.383e-9■■□□□ 14.4
YBX3P16989 ST6GAL1-211ENST00000448044 4302 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.273e-9■■□□□ 14.4
YBX3P16989 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC20.4■□□□□ 0.865e-18■■□□□ 14.4
YBX3P16989 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.715e-18■■□□□ 14.4
YBX3P16989 PRG2-203ENST00000530105 1048 ntTSL 518.2■□□□□ 0.55e-18■■□□□ 14.4
YBX3P16989 PRG2-204ENST00000533605 1350 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.035e-18■■□□□ 14.4
YBX3P16989 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.38e-7■■□□□ 14.4
Retrieved 100 of 29,075 protein–RNA pairs in 616.1 ms