RNA–Protein interactions for RNA: ENST00000216414.12

CDKN3-201, Transcript of cyclin dependent kinase inhibitor 3, humanhuman

TSL 1 (best)

Gene CDKN3, Length 373 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDKN3-201ENST00000216414 AEBP2Q6ZN18 517 aaPredicted RBP22.18■■□□□ 1.14
CDKN3-201ENST00000216414 CHIC1Q5VXU3 224 aa20.88■□□□□ 0.93
CDKN3-201ENST00000216414 SENP3Q9H4L4 574 aaPredicted RBP19.09■□□□□ 0.65
CDKN3-201ENST00000216414 PHF23Q9BUL5 403 aaPredicted RBP18.77■□□□□ 0.6
CDKN3-201ENST00000216414 FOXD1Q16676 465 aa17.78■□□□□ 0.44
CDKN3-201ENST00000216414 POTEDQ86YR6 584 aa16.92■□□□□ 0.3
CDKN3-201ENST00000216414 MSH5O43196 834 aa16.85■□□□□ 0.29
CDKN3-201ENST00000216414 PIAS4Q8N2W9 510 aaPredicted RBP16.58■□□□□ 0.24
CDKN3-201ENST00000216414 PLPPR3Q6T4P5 718 aa16.54■□□□□ 0.24
CDKN3-201ENST00000216414 PPP6R1Q9UPN7 881 aa16.32■□□□□ 0.2
CDKN3-201ENST00000216414 ADRA2BP18089 450 aa16.3■□□□□ 0.2
CDKN3-201ENST00000216414 MAPK8IP2Q13387 824 aaPredicted RBP15.05■□□□□ -0
CDKN3-201ENST00000216414 DMRT2Q9Y5R5 561 aa15.05■□□□□ -0
CDKN3-201ENST00000216414 SCAF1Q9H7N4 1312 aaKnown RBP15.05■□□□□ -0
CDKN3-201ENST00000216414 CACNB1Q02641 598 aaPredicted RBP14.66□□□□□ -0.06
CDKN3-201ENST00000216414 DCAF8L1A6NGE4 600 aa14.54□□□□□ -0.08
CDKN3-201ENST00000216414 PPP4R3CPQ6ZMV5 832 aa14.43□□□□□ -0.1
CDKN3-201ENST00000216414 HOXD11P31277 338 aaPredicted RBP14.36□□□□□ -0.11
CDKN3-201ENST00000216414 RNF39Q9H2S5 420 aa14.27□□□□□ -0.13
CDKN3-201ENST00000216414 CNKSR2Q8WXI2 1034 aa14.26□□□□□ -0.13
CDKN3-201ENST00000216414 RNF216Q9NWF9 866 aaPredicted RBP14.2□□□□□ -0.14
CDKN3-201ENST00000216414 C1QBPQ07021 282 aaKnown RBP14.11□□□□□ -0.15
CDKN3-201ENST00000216414 DNAJC5BQ9UF47 199 aa13.96□□□□□ -0.17
CDKN3-201ENST00000216414 NCBP3Q53F19 620 aaKnown RBP13.86□□□□□ -0.19
CDKN3-201ENST00000216414 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.76□□□□□ -0.21
CDKN3-201ENST00000216414 NPM3O75607 178 aaKnown RBP13.55□□□□□ -0.24
CDKN3-201ENST00000216414 U3KPZ7 1027 aaPredicted RBP13.36□□□□□ -0.27
CDKN3-201ENST00000216414 CAPN15O75808 1086 aa13.34□□□□□ -0.27
CDKN3-201ENST00000216414 DSG3P32926 999 aa13.27□□□□□ -0.29
CDKN3-201ENST00000216414 SPINK5Q9NQ38 1064 aaPredicted RBP13.26□□□□□ -0.29
CDKN3-201ENST00000216414 KCNA4P22459 653 aa13.25□□□□□ -0.29
CDKN3-201ENST00000216414 POTEHQ6S545 545 aa13.22□□□□□ -0.29
CDKN3-201ENST00000216414 APLP2Q06481 763 aa13.11□□□□□ -0.31
CDKN3-201ENST00000216414 TRHP20396 242 aaPredicted RBP13.04□□□□□ -0.32
CDKN3-201ENST00000216414 ZNF219Q9P2Y4 722 aaPredicted RBP13.01□□□□□ -0.33
CDKN3-201ENST00000216414 SLC4A2P04920 1241 aa12.99□□□□□ -0.33
CDKN3-201ENST00000216414 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.98□□□□□ -0.33
CDKN3-201ENST00000216414 HNRNPUL2Q1KMD3 747 aaKnown RBP12.98□□□□□ -0.33
CDKN3-201ENST00000216414 ABCB7O75027 752 aa12.94□□□□□ -0.34
CDKN3-201ENST00000216414 SAMD1Q6SPF0 538 aaPredicted RBP12.86□□□□□ -0.35
CDKN3-201ENST00000216414 RBM42Q9BTD8 480 aaKnown RBP12.76□□□□□ -0.37
CDKN3-201ENST00000216414 MYCNP04198 464 aaPredicted RBP12.59□□□□□ -0.39
CDKN3-201ENST00000216414 POLA2Q14181 598 aa12.59□□□□□ -0.39
CDKN3-201ENST00000216414 CHRDL2Q6WN34 429 aa12.55□□□□□ -0.4
CDKN3-201ENST00000216414 SLC4A1APQ9BWU0 796 aaKnown RBP12.53□□□□□ -0.4
CDKN3-201ENST00000216414 FOXD4L1Q9NU39 408 aa12.38□□□□□ -0.43
CDKN3-201ENST00000216414 AKT1S1Q96B36 256 aa12.36□□□□□ -0.43
CDKN3-201ENST00000216414 ZBTB12Q9Y330 459 aaPredicted RBP12.36□□□□□ -0.43
CDKN3-201ENST00000216414 SP7Q8TDD2 431 aaPredicted RBP12.25□□□□□ -0.45
CDKN3-201ENST00000216414 ATF5Q9Y2D1 282 aaPredicted RBP12.23□□□□□ -0.45
CDKN3-201ENST00000216414 REM2Q8IYK8 340 aaPredicted RBP12.21□□□□□ -0.45
CDKN3-201ENST00000216414 ZBTB22O15209 634 aa12.17□□□□□ -0.46
CDKN3-201ENST00000216414 OSCARQ8IYS5 282 aa12.16□□□□□ -0.46
CDKN3-201ENST00000216414 PIP4P2Q8N4L2 257 aa12.15□□□□□ -0.46
CDKN3-201ENST00000216414 HAX1O00165 279 aa12.1□□□□□ -0.47
CDKN3-201ENST00000216414 PITPNM1O00562 1244 aa12.07□□□□□ -0.48
CDKN3-201ENST00000216414 FXR2P51116 673 aaKnown RBP eCLIP12.03□□□□□ -0.48
CDKN3-201ENST00000216414 ATXN8OSP0DMR3 200 aa11.96□□□□□ -0.49
CDKN3-201ENST00000216414 FBLN2P98095 1184 aa11.93□□□□□ -0.5
CDKN3-201ENST00000216414 SPDYE2BA6NHP3 402 aa11.91□□□□□ -0.5
CDKN3-201ENST00000216414 SPDYE6P0CI01 402 aa11.91□□□□□ -0.5
CDKN3-201ENST00000216414 SPDYE2Q495Y8 402 aa11.91□□□□□ -0.5
CDKN3-201ENST00000216414 CLEC11AQ9Y240 323 aa11.82□□□□□ -0.52
CDKN3-201ENST00000216414 EVX2Q03828 476 aa11.81□□□□□ -0.52
CDKN3-201ENST00000216414 SPDYE1Q8NFV5 336 aaPredicted RBP11.81□□□□□ -0.52
CDKN3-201ENST00000216414 PRKAR2AP13861 404 aaKnown RBP11.79□□□□□ -0.52
CDKN3-201ENST00000216414 ZNF692Q9BU19 519 aaPredicted RBP11.74□□□□□ -0.53
CDKN3-201ENST00000216414 C19orf67A6NJJ6 358 aa11.66□□□□□ -0.54
CDKN3-201ENST00000216414 MKRN4PQ13434 485 aaPredicted RBP11.65□□□□□ -0.54
CDKN3-201ENST00000216414 SSUH2Q9Y2M2 353 aa11.65□□□□□ -0.54
CDKN3-201ENST00000216414 CSRNP3Q8WYN3 585 aa11.6□□□□□ -0.55
CDKN3-201ENST00000216414 GABBR2O75899 941 aa11.58□□□□□ -0.56
CDKN3-201ENST00000216414 PRR29P0C7W0 189 aa11.58□□□□□ -0.56
CDKN3-201ENST00000216414 CHADLQ6NUI6 762 aa11.55□□□□□ -0.56
CDKN3-201ENST00000216414 PABPN1Q86U42 306 aaKnown RBP eCLIP11.53□□□□□ -0.56
CDKN3-201ENST00000216414 EHMT2Q96KQ7 1210 aa11.52□□□□□ -0.57
CDKN3-201ENST00000216414 LHX8Q68G74 356 aa11.51□□□□□ -0.57
CDKN3-201ENST00000216414 CD44P16070 742 aaKnown RBP11.41□□□□□ -0.58
CDKN3-201ENST00000216414 CLCN6P51797 869 aa11.38□□□□□ -0.59
CDKN3-201ENST00000216414 FARP1Q9Y4F1 1045 aaPredicted RBP11.38□□□□□ -0.59
CDKN3-201ENST00000216414 DCBLD2Q96PD2 775 aa11.28□□□□□ -0.6
CDKN3-201ENST00000216414 POTEIP0CG38 1075 aa11.27□□□□□ -0.61
CDKN3-201ENST00000216414 ZRANB1Q9UGI0 708 aa11.21□□□□□ -0.61
CDKN3-201ENST00000216414 STAG3Q9UJ98 1225 aa11.2□□□□□ -0.62
CDKN3-201ENST00000216414 ZNF579Q8NAF0 562 aaKnown RBP11.18□□□□□ -0.62
CDKN3-201ENST00000216414 SPDYE4A6NLX3 237 aa11.12□□□□□ -0.63
CDKN3-201ENST00000216414 PAK3O75914 559 aaPredicted RBP11.12□□□□□ -0.63
CDKN3-201ENST00000216414 CREBZFQ9NS37 354 aa11.12□□□□□ -0.63
CDKN3-201ENST00000216414 PLSCR2Q9NRY7 297 aa11.08□□□□□ -0.64
CDKN3-201ENST00000216414 GALR2O43603 387 aaPredicted RBP11.06□□□□□ -0.64
CDKN3-201ENST00000216414 NPM1P06748 294 aaKnown RBP eCLIP11.02□□□□□ -0.65
CDKN3-201ENST00000216414 PHF12Q96QT6 1004 aa10.97□□□□□ -0.65
CDKN3-201ENST00000216414 OTUD5Q96G74 571 aa10.95□□□□□ -0.66
CDKN3-201ENST00000216414 POTEB2H3BUK9 544 aa10.89□□□□□ -0.67
CDKN3-201ENST00000216414 POTEMA6NI47 508 aa10.85□□□□□ -0.67
CDKN3-201ENST00000216414 MNX1P50219 401 aaPredicted RBP10.85□□□□□ -0.67
CDKN3-201ENST00000216414 PELP1Q8IZL8 1130 aaKnown RBP10.85□□□□□ -0.67
CDKN3-201ENST00000216414 SLC39A7Q92504 469 aa10.83□□□□□ -0.68
CDKN3-201ENST00000216414 C7P10643 843 aa10.82□□□□□ -0.68
CDKN3-201ENST00000216414 ASTLQ6HA08 431 aaPredicted RBP10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 121 ms