Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC21.18■□□□□ 0.98
TPM1P09493 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
TPM1P09493 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
TPM1P09493 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TPM1P09493 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
TPM1P09493 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TPM1P09493 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC21.18■□□□□ 0.98
TPM1P09493 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
TPM1P09493 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC21.17■□□□□ 0.98
TPM1P09493 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC21.17■□□□□ 0.98
TPM1P09493 AC006333.2-201ENST00000607957 2099 ntBASIC21.17■□□□□ 0.98
TPM1P09493 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TPM1P09493 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TPM1P09493 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC21.17■□□□□ 0.98
TPM1P09493 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
TPM1P09493 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC21.17■□□□□ 0.98
TPM1P09493 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC21.17■□□□□ 0.98
TPM1P09493 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TPM1P09493 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TPM1P09493 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
TPM1P09493 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC21.17■□□□□ 0.98
TPM1P09493 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC21.17■□□□□ 0.98
TPM1P09493 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
TPM1P09493 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
TPM1P09493 AC010980.2-201ENST00000587099 1412 ntBASIC21.17■□□□□ 0.98
TPM1P09493 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
TPM1P09493 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
TPM1P09493 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
TPM1P09493 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
TPM1P09493 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC21.17■□□□□ 0.98
TPM1P09493 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC21.17■□□□□ 0.98
TPM1P09493 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TPM1P09493 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TPM1P09493 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
TPM1P09493 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
TPM1P09493 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TPM1P09493 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
TPM1P09493 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC21.16■□□□□ 0.98
TPM1P09493 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC21.16■□□□□ 0.98
TPM1P09493 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TPM1P09493 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TPM1P09493 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC21.16■□□□□ 0.98
TPM1P09493 ZNF815P-204ENST00000434898 1737 ntBASIC21.16■□□□□ 0.98
TPM1P09493 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
TPM1P09493 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
TPM1P09493 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC21.16■□□□□ 0.98
TPM1P09493 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TPM1P09493 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TPM1P09493 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TPM1P09493 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC21.16■□□□□ 0.98
TPM1P09493 AC011767.1-201ENST00000617410 1153 ntBASIC21.16■□□□□ 0.98
TPM1P09493 AC231657.2-201ENST00000624556 255 ntBASIC21.16■□□□□ 0.98
TPM1P09493 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TPM1P09493 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
TPM1P09493 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
TPM1P09493 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
TPM1P09493 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC21.16■□□□□ 0.98
TPM1P09493 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC21.16■□□□□ 0.98
TPM1P09493 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
TPM1P09493 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
TPM1P09493 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
TPM1P09493 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
TPM1P09493 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TPM1P09493 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC21.15■□□□□ 0.98
TPM1P09493 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC21.15■□□□□ 0.98
TPM1P09493 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
TPM1P09493 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
TPM1P09493 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TPM1P09493 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TPM1P09493 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
TPM1P09493 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC21.15■□□□□ 0.98
TPM1P09493 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TPM1P09493 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC21.15■□□□□ 0.98
TPM1P09493 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TPM1P09493 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TPM1P09493 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC21.15■□□□□ 0.98
TPM1P09493 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TPM1P09493 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TPM1P09493 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC21.15■□□□□ 0.98
TPM1P09493 AC005332.8-201ENST00000622750 2735 ntBASIC21.15■□□□□ 0.98
TPM1P09493 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TPM1P09493 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC21.15■□□□□ 0.98
TPM1P09493 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
TPM1P09493 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC21.15■□□□□ 0.98
TPM1P09493 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TPM1P09493 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
TPM1P09493 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TPM1P09493 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
TPM1P09493 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC21.14■□□□□ 0.98
TPM1P09493 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.98
TPM1P09493 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC21.14■□□□□ 0.98
TPM1P09493 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC21.14■□□□□ 0.98
TPM1P09493 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
TPM1P09493 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
TPM1P09493 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC21.14■□□□□ 0.97
TPM1P09493 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TPM1P09493 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TPM1P09493 AC007322.1-201ENST00000426983 750 ntBASIC21.14■□□□□ 0.97
TPM1P09493 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC21.14■□□□□ 0.97
TPM1P09493 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC21.14■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms