Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VIMP08670 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
VIMP08670 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VIMP08670 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
VIMP08670 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC19.32■□□□□ 0.68
VIMP08670 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
VIMP08670 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
VIMP08670 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VIMP08670 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VIMP08670 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC19.31■□□□□ 0.68
VIMP08670 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VIMP08670 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC19.31■□□□□ 0.68
VIMP08670 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC19.31■□□□□ 0.68
VIMP08670 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC19.31■□□□□ 0.68
VIMP08670 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VIMP08670 EDA-201ENST00000338901 1233 ntBASIC19.31■□□□□ 0.68
VIMP08670 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
VIMP08670 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
VIMP08670 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC19.31■□□□□ 0.68
VIMP08670 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC19.31■□□□□ 0.68
VIMP08670 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
VIMP08670 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VIMP08670 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
VIMP08670 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VIMP08670 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
VIMP08670 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
VIMP08670 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC19.31■□□□□ 0.68
VIMP08670 HR-201ENST00000312841 5351 ntTSL 5 BASIC19.31■□□□□ 0.68
VIMP08670 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VIMP08670 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VIMP08670 CD276-201ENST00000318424 2738 ntTSL 5 BASIC19.31■□□□□ 0.68
VIMP08670 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC19.31■□□□□ 0.68
VIMP08670 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VIMP08670 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VIMP08670 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
VIMP08670 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VIMP08670 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC19.3■□□□□ 0.68
VIMP08670 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC19.3■□□□□ 0.68
VIMP08670 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC19.3■□□□□ 0.68
VIMP08670 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VIMP08670 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VIMP08670 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VIMP08670 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
VIMP08670 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC19.3■□□□□ 0.68
VIMP08670 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
VIMP08670 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VIMP08670 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VIMP08670 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VIMP08670 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VIMP08670 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
VIMP08670 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC19.3■□□□□ 0.68
VIMP08670 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
VIMP08670 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC19.3■□□□□ 0.68
VIMP08670 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VIMP08670 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
VIMP08670 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
VIMP08670 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
VIMP08670 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
VIMP08670 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VIMP08670 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC19.29■□□□□ 0.68
VIMP08670 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC19.29■□□□□ 0.68
VIMP08670 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC19.29■□□□□ 0.68
VIMP08670 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
VIMP08670 CD276-203ENST00000537340 2439 ntTSL 2 BASIC19.29■□□□□ 0.68
VIMP08670 IRS3P-201ENST00000223076 1006 ntBASIC19.29■□□□□ 0.68
VIMP08670 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VIMP08670 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
VIMP08670 KRT18P20-201ENST00000548986 1279 ntBASIC19.29■□□□□ 0.68
VIMP08670 GRAMD4P4-201ENST00000613563 1115 ntBASIC19.29■□□□□ 0.68
VIMP08670 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
VIMP08670 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
VIMP08670 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
VIMP08670 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
VIMP08670 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC19.29■□□□□ 0.68
VIMP08670 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC19.29■□□□□ 0.68
VIMP08670 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
VIMP08670 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC19.29■□□□□ 0.68
VIMP08670 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC19.29■□□□□ 0.68
VIMP08670 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
VIMP08670 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VIMP08670 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC19.28■□□□□ 0.68
VIMP08670 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
VIMP08670 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC19.28■□□□□ 0.68
VIMP08670 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VIMP08670 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
VIMP08670 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VIMP08670 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC19.28■□□□□ 0.68
VIMP08670 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VIMP08670 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC19.28■□□□□ 0.68
VIMP08670 EBPL-204ENST00000378272 766 ntTSL 3 BASIC19.28■□□□□ 0.68
VIMP08670 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
VIMP08670 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC19.28■□□□□ 0.68
VIMP08670 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC19.28■□□□□ 0.68
VIMP08670 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
VIMP08670 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
VIMP08670 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC19.28■□□□□ 0.68
VIMP08670 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
VIMP08670 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
VIMP08670 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VIMP08670 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms