Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 KRT8P11-201ENST00000409686 1436 ntBASIC18.8■□□□□ 0.6
SDC3O75056 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SDC3O75056 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC18.8■□□□□ 0.6
SDC3O75056 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SDC3O75056 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SDC3O75056 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC18.8■□□□□ 0.6
SDC3O75056 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SDC3O75056 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
SDC3O75056 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SDC3O75056 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SDC3O75056 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
SDC3O75056 Telomerase-vert.1-201ENST00000363312 438 ntBASIC18.79■□□□□ 0.6
SDC3O75056 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SDC3O75056 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
SDC3O75056 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SDC3O75056 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SDC3O75056 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC18.79■□□□□ 0.6
SDC3O75056 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
SDC3O75056 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC18.79■□□□□ 0.6
SDC3O75056 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC18.79■□□□□ 0.6
SDC3O75056 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC18.79■□□□□ 0.6
SDC3O75056 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SDC3O75056 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
SDC3O75056 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
SDC3O75056 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SDC3O75056 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC18.79■□□□□ 0.6
SDC3O75056 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SDC3O75056 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SDC3O75056 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SDC3O75056 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
SDC3O75056 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC18.78■□□□□ 0.6
SDC3O75056 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SDC3O75056 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SDC3O75056 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC18.78■□□□□ 0.6
SDC3O75056 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SDC3O75056 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SDC3O75056 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SDC3O75056 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
SDC3O75056 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SDC3O75056 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC18.78■□□□□ 0.6
SDC3O75056 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC18.78■□□□□ 0.6
SDC3O75056 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SDC3O75056 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC18.78■□□□□ 0.6
SDC3O75056 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SDC3O75056 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC18.78■□□□□ 0.6
SDC3O75056 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC18.78■□□□□ 0.6
SDC3O75056 AL031432.5-201ENST00000641059 760 ntBASIC18.78■□□□□ 0.6
SDC3O75056 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SDC3O75056 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
SDC3O75056 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC18.78■□□□□ 0.6
SDC3O75056 AL162377.1-201ENST00000618844 1793 ntBASIC18.78■□□□□ 0.6
SDC3O75056 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
SDC3O75056 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC18.77■□□□□ 0.6
SDC3O75056 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
SDC3O75056 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SDC3O75056 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.6
SDC3O75056 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SDC3O75056 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC18.77■□□□□ 0.6
SDC3O75056 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
SDC3O75056 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC18.77■□□□□ 0.6
SDC3O75056 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
SDC3O75056 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC18.77■□□□□ 0.6
SDC3O75056 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SDC3O75056 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SDC3O75056 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SDC3O75056 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SDC3O75056 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC18.77■□□□□ 0.6
SDC3O75056 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC18.77■□□□□ 0.6
SDC3O75056 PCED1CP-201ENST00000419887 785 ntBASIC18.77■□□□□ 0.6
SDC3O75056 HOMER2P1-201ENST00000455653 964 ntBASIC18.77■□□□□ 0.6
SDC3O75056 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC18.77■□□□□ 0.6
SDC3O75056 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC18.77■□□□□ 0.6
SDC3O75056 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC18.77■□□□□ 0.6
SDC3O75056 ETFA-216ENST00000560726 942 ntTSL 3 BASIC18.77■□□□□ 0.6
SDC3O75056 DBP-204ENST00000599385 709 ntTSL 3 BASIC18.77■□□□□ 0.6
SDC3O75056 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC18.77■□□□□ 0.6
SDC3O75056 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC18.77■□□□□ 0.6
SDC3O75056 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC18.77■□□□□ 0.6
SDC3O75056 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC18.77■□□□□ 0.6
SDC3O75056 AP000550.4-202ENST00000639755 178 ntBASIC18.77■□□□□ 0.6
SDC3O75056 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SDC3O75056 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
SDC3O75056 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SDC3O75056 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC18.77■□□□□ 0.59
SDC3O75056 ANKRD18DP-204ENST00000455355 1975 ntBASIC18.77■□□□□ 0.59
SDC3O75056 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.59
SDC3O75056 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.59
SDC3O75056 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SDC3O75056 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
SDC3O75056 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SDC3O75056 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC18.76■□□□□ 0.59
SDC3O75056 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SDC3O75056 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SDC3O75056 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SDC3O75056 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
SDC3O75056 AL671277.2-201ENST00000458060 996 ntBASIC18.76■□□□□ 0.59
SDC3O75056 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC18.76■□□□□ 0.59
SDC3O75056 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SDC3O75056 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC18.76■□□□□ 0.59
SDC3O75056 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms