Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 AC068860.1-201ENST00000623701 3736 ntBASIC10.09□□□□□ -0.79
MSH5O43196 CTSL3P-201ENST00000354530 657 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
MSH5O43196 SNORA63.5-201ENST00000363548 123 ntBASIC10.09□□□□□ -0.79
MSH5O43196 RNU6-1048P-201ENST00000364054 107 ntBASIC10.09□□□□□ -0.79
MSH5O43196 MIR153-2-201ENST00000385225 87 ntBASIC10.09□□□□□ -0.79
MSH5O43196 MIR1263-201ENST00000408324 86 ntBASIC10.09□□□□□ -0.79
MSH5O43196 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC10.09□□□□□ -0.79
MSH5O43196 AL133351.3-201ENST00000454998 193 ntBASIC10.09□□□□□ -0.79
MSH5O43196 AC092349.1-201ENST00000504903 310 ntBASIC10.09□□□□□ -0.79
MSH5O43196 MRPL40P1-201ENST00000542687 604 ntBASIC10.09□□□□□ -0.79
MSH5O43196 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC10.09□□□□□ -0.79
MSH5O43196 AL138693.1-201ENST00000622219 129 ntBASIC10.09□□□□□ -0.79
MSH5O43196 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
MSH5O43196 ACOT13-201ENST00000230048 4047 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
MSH5O43196 CDK19-201ENST00000323817 6067 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
MSH5O43196 NEDD4L-207ENST00000435432 3417 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
MSH5O43196 AC084782.1-201ENST00000564401 2465 ntBASIC10.09□□□□□ -0.79
MSH5O43196 SPIRE1-206ENST00000453447 2107 ntTSL 5 BASIC10.09□□□□□ -0.79
MSH5O43196 CDK19-203ENST00000413605 6007 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
MSH5O43196 NFIA-204ENST00000371187 2683 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
MSH5O43196 AC245060.6-201ENST00000624350 8420 ntBASIC10.09□□□□□ -0.79
MSH5O43196 ABCD3-202ENST00000370214 3538 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
MSH5O43196 KIF1B-201ENST00000263934 6816 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
MSH5O43196 CAGE1-208ENST00000512086 2537 ntAPPRIS ALT2 TSL 5 BASIC10.08□□□□□ -0.8
MSH5O43196 DNAH10-201ENST00000409039 14473 ntAPPRIS ALT2 TSL 5 BASIC10.08□□□□□ -0.8
MSH5O43196 ELOVL5-201ENST00000304434 2827 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
MSH5O43196 TMCC1-203ENST00000432054 5631 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
MSH5O43196 ZNF559-ZNF177-202ENST00000446085 2470 ntTSL 5 BASIC10.08□□□□□ -0.8
MSH5O43196 LGALS17A-201ENST00000412609 2562 ntTSL 2 BASIC10.08□□□□□ -0.8
MSH5O43196 AP001541.1-201ENST00000623322 1904 ntBASIC10.08□□□□□ -0.8
MSH5O43196 SNORD82-201ENST00000365530 70 ntBASIC10.08□□□□□ -0.8
MSH5O43196 MIR10B-201ENST00000385011 110 ntBASIC10.08□□□□□ -0.8
MSH5O43196 AL603914.1-201ENST00000401964 204 ntBASIC10.08□□□□□ -0.8
MSH5O43196 HLFP1-201ENST00000402375 499 ntBASIC10.08□□□□□ -0.8
MSH5O43196 AL713965.1-201ENST00000421166 230 ntTSL 5 BASIC10.08□□□□□ -0.8
MSH5O43196 CYCSP52-201ENST00000422857 310 ntBASIC10.08□□□□□ -0.8
MSH5O43196 RPS27AP12-201ENST00000429552 465 ntBASIC10.08□□□□□ -0.8
MSH5O43196 AC016712.1-201ENST00000431088 378 ntBASIC10.08□□□□□ -0.8
MSH5O43196 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC10.08□□□□□ -0.8
MSH5O43196 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
MSH5O43196 AC004129.2-201ENST00000457229 287 ntBASIC10.08□□□□□ -0.8
MSH5O43196 AL122013.1-201ENST00000473054 801 ntBASIC10.08□□□□□ -0.8
MSH5O43196 RFPL4AP3-201ENST00000515267 345 ntBASIC10.08□□□□□ -0.8
MSH5O43196 RNU6-914P-201ENST00000516749 109 ntBASIC10.08□□□□□ -0.8
MSH5O43196 AP001922.2-201ENST00000530435 390 ntTSL 3 BASIC10.08□□□□□ -0.8
MSH5O43196 AC012464.1-201ENST00000550687 540 ntTSL 4 BASIC10.08□□□□□ -0.8
MSH5O43196 MIR378H-201ENST00000579966 83 ntBASIC10.08□□□□□ -0.8
MSH5O43196 AL161629.2-201ENST00000615347 275 ntBASIC10.08□□□□□ -0.8
MSH5O43196 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC10.08□□□□□ -0.8
MSH5O43196 AL162377.2-201ENST00000624532 337 ntBASIC10.08□□□□□ -0.8
MSH5O43196 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC10.08□□□□□ -0.8
MSH5O43196 AP2B1-215ENST00000616681 3267 ntTSL 2 BASIC10.08□□□□□ -0.8
MSH5O43196 MTMR8-201ENST00000374852 2639 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
MSH5O43196 FBXL17-203ENST00000496714 3773 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
MSH5O43196 CRYBG3-201ENST00000389622 10729 ntAPPRIS P1 TSL 5 BASIC10.08□□□□□ -0.8
MSH5O43196 SEC23IP-201ENST00000369075 7168 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
MSH5O43196 HEATR9-207ENST00000604834 1974 ntAPPRIS P3 TSL 1 (best) BASIC10.08□□□□□ -0.8
MSH5O43196 STEAP2-205ENST00000394629 2261 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
MSH5O43196 ANKFY1-201ENST00000341657 7418 ntAPPRIS ALT1 TSL 5 BASIC10.08□□□□□ -0.8
MSH5O43196 AC083837.1-201ENST00000565297 2994 ntBASIC10.08□□□□□ -0.8
MSH5O43196 ZNF540-202ENST00000343599 3073 ntAPPRIS P3 TSL 5 BASIC10.08□□□□□ -0.8
MSH5O43196 CNOT4-205ENST00000423368 3297 ntAPPRIS ALT1 TSL 1 (best) BASIC10.08□□□□□ -0.8
MSH5O43196 SLC3A1-206ENST00000409740 1418 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
MSH5O43196 TAF1-204ENST00000423759 7722 ntAPPRIS ALT2 TSL 5 BASIC10.07□□□□□ -0.8
MSH5O43196 LMO7-207ENST00000465261 5580 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
MSH5O43196 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC10.07□□□□□ -0.8
MSH5O43196 HBS1L-212ENST00000527578 2618 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
MSH5O43196 BRAFP1-201ENST00000445336 2703 ntBASIC10.07□□□□□ -0.8
MSH5O43196 MON2-202ENST00000393630 13275 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
MSH5O43196 ATXN3-203ENST00000393287 6770 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
MSH5O43196 DDX58-202ENST00000379883 4353 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
MSH5O43196 LINC00652-201ENST00000412553 3299 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
MSH5O43196 KLRD1-203ENST00000350274 3165 ntAPPRIS ALT2 TSL 1 (best) BASIC10.07□□□□□ -0.8
MSH5O43196 CEP97-206ENST00000494050 2870 ntAPPRIS ALT2 TSL 2 BASIC10.07□□□□□ -0.8
MSH5O43196 INTS6-202ENST00000398119 7041 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
MSH5O43196 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC10.07□□□□□ -0.8
MSH5O43196 OSGIN2-201ENST00000297438 4209 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
MSH5O43196 SNORD18B-201ENST00000365659 72 ntBASIC10.07□□□□□ -0.8
MSH5O43196 RNU6-1199P-201ENST00000411249 104 ntBASIC10.07□□□□□ -0.8
MSH5O43196 LINC00308-201ENST00000419431 727 ntTSL 5 BASIC10.07□□□□□ -0.8
MSH5O43196 AL162389.1-201ENST00000449233 177 ntBASIC10.07□□□□□ -0.8
MSH5O43196 AC008620.1-201ENST00000468453 592 ntBASIC10.07□□□□□ -0.8
MSH5O43196 AC092865.4-201ENST00000477936 615 ntBASIC10.07□□□□□ -0.8
MSH5O43196 AP004609.2-201ENST00000532177 190 ntBASIC10.07□□□□□ -0.8
MSH5O43196 FAM30C-201ENST00000561158 410 ntBASIC10.07□□□□□ -0.8
MSH5O43196 MIR3137-201ENST00000577367 75 ntBASIC10.07□□□□□ -0.8
MSH5O43196 AL035470.1-201ENST00000622571 220 ntBASIC10.07□□□□□ -0.8
MSH5O43196 MAPK10-272ENST00000641110 2724 ntAPPRIS P2 BASIC10.07□□□□□ -0.8
MSH5O43196 OR2AH1P-202ENST00000641232 2744 ntBASIC10.07□□□□□ -0.8
MSH5O43196 NRXN1-206ENST00000402717 2508 ntTSL 5 BASIC10.07□□□□□ -0.8
MSH5O43196 NBEA-202ENST00000379922 3794 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
MSH5O43196 AC034111.1-201ENST00000562143 3770 ntBASIC10.07□□□□□ -0.8
MSH5O43196 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC10.07□□□□□ -0.8
MSH5O43196 PALM2-AKAP2-201ENST00000302798 4718 ntTSL 2 BASIC10.07□□□□□ -0.8
MSH5O43196 ASNSP1-201ENST00000518311 1939 ntBASIC10.07□□□□□ -0.8
MSH5O43196 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC10.07□□□□□ -0.8
MSH5O43196 TOGARAM2-201ENST00000379558 12691 ntAPPRIS P1 TSL 5 BASIC10.07□□□□□ -0.8
MSH5O43196 MATR3-215ENST00000510056 3040 ntTSL 5 BASIC10.07□□□□□ -0.8
MSH5O43196 MYOCD-203ENST00000425538 8466 ntAPPRIS ALT2 TSL 1 (best) BASIC10.06□□□□□ -0.8
MSH5O43196 NLRC4-204ENST00000404025 3581 ntAPPRIS P1 TSL 5 BASIC10.06□□□□□ -0.8
Retrieved 100 of 98,524 protein–RNA pairs in 208.1 ms