RNA–Protein interactions for RNA: ENST00000379883.2

DDX58-202, Transcript of DExD/H-box helicase 58, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DDX58, Length 4,353 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX58-202ENST00000379883 NISCHQ9Y2I1 1504 aa12.98□□□□□ -0.33
DDX58-202ENST00000379883 PELP1Q8IZL8 1130 aaKnown RBP12.27□□□□□ -0.45
DDX58-202ENST00000379883 HRCP23327 699 aa12.12□□□□□ -0.47
DDX58-202ENST00000379883 MYT1Q01538 1121 aa11.98□□□□□ -0.49
DDX58-202ENST00000379883 PCGF6Q9BYE7 350 aa11.77□□□□□ -0.53
DDX58-202ENST00000379883 SUPT5HO00267 1087 aaKnown RBP11.67□□□□□ -0.54
DDX58-202ENST00000379883 ZEB1P37275 1124 aaPredicted RBP11.65□□□□□ -0.54
DDX58-202ENST00000379883 PPARGC1BQ86YN6 1023 aaKnown RBP11.63□□□□□ -0.55
DDX58-202ENST00000379883 SHROOM4Q9ULL8 1493 aa11.55□□□□□ -0.56
DDX58-202ENST00000379883 DCAF1Q9Y4B6 1507 aa11.5□□□□□ -0.57
DDX58-202ENST00000379883 CHIC1Q5VXU3 224 aa11.5□□□□□ -0.57
DDX58-202ENST00000379883 TRIM26Q12899 539 aaPredicted RBP11.49□□□□□ -0.57
DDX58-202ENST00000379883 SCAF1Q9H7N4 1312 aaKnown RBP11.41□□□□□ -0.58
DDX58-202ENST00000379883 MYO15BQ96JP2 1530 aa11.38□□□□□ -0.59
DDX58-202ENST00000379883 CENPBP07199 599 aaPredicted RBP11.35□□□□□ -0.59
DDX58-202ENST00000379883 CCDC180Q9P1Z9 1646 aa11.34□□□□□ -0.59
DDX58-202ENST00000379883 ACIN1Q9UKV3 1341 aaKnown RBP11.26□□□□□ -0.61
DDX58-202ENST00000379883 TTBK1Q5TCY1 1321 aaPredicted RBP11.26□□□□□ -0.61
DDX58-202ENST00000379883 LOC105371045A0A1W2PR82 267 aa11.15□□□□□ -0.62
DDX58-202ENST00000379883 GTF3C3Q9Y5Q9 886 aa11.14□□□□□ -0.63
DDX58-202ENST00000379883 NEUROD1Q13562 356 aa11.09□□□□□ -0.63
DDX58-202ENST00000379883 ZCCHC6Q5VYS8 1495 aaKnown RBP11.06□□□□□ -0.64
DDX58-202ENST00000379883 DIEXFQ68CQ4 756 aaKnown RBP11.02□□□□□ -0.65
DDX58-202ENST00000379883 CCER1Q8TC90 406 aaPredicted RBP11□□□□□ -0.65
DDX58-202ENST00000379883 DCAF8L2P0C7V8 631 aa10.91□□□□□ -0.66
DDX58-202ENST00000379883 TRIM41Q8WV44 630 aa10.89□□□□□ -0.67
DDX58-202ENST00000379883 CLSPNQ9HAW4 1339 aa10.88□□□□□ -0.67
DDX58-202ENST00000379883 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.82□□□□□ -0.68
DDX58-202ENST00000379883 ZNF316A6NFI3 1004 aaPredicted RBP10.81□□□□□ -0.68
DDX58-202ENST00000379883 YTHDC1Q96MU7 727 aaKnown RBP10.8□□□□□ -0.68
DDX58-202ENST00000379883 FAM9AQ8IZU1 332 aaPredicted RBP10.77□□□□□ -0.69
DDX58-202ENST00000379883 ANP32EQ9BTT0 268 aa10.75□□□□□ -0.69
DDX58-202ENST00000379883 BCL11AQ9H165 835 aa10.73□□□□□ -0.69
DDX58-202ENST00000379883 EHMT2Q96KQ7 1210 aa10.65□□□□□ -0.7
DDX58-202ENST00000379883 MIER1Q8N108 512 aa10.6□□□□□ -0.71
DDX58-202ENST00000379883 ERICH6Q7L0X2 663 aa10.56□□□□□ -0.72
DDX58-202ENST00000379883 SUPT16HQ9Y5B9 1047 aaKnown RBP10.55□□□□□ -0.72
DDX58-202ENST00000379883 ABCC9O60706 1549 aa10.52□□□□□ -0.72
DDX58-202ENST00000379883 TSHZ2Q9NRE2 1034 aa10.52□□□□□ -0.73
DDX58-202ENST00000379883 MYT1LQ9UL68 1186 aa10.5□□□□□ -0.73
DDX58-202ENST00000379883 RB1CC1Q8TDY2 1594 aa10.49□□□□□ -0.73
DDX58-202ENST00000379883 NEFLP07196 543 aa10.49□□□□□ -0.73
DDX58-202ENST00000379883 RSF1Q96T23 1441 aaPredicted RBP10.48□□□□□ -0.73
DDX58-202ENST00000379883 WRNQ14191 1432 aaPredicted RBP eCLIP10.48□□□□□ -0.73
DDX58-202ENST00000379883 CSRNP3Q8WYN3 585 aa10.48□□□□□ -0.73
DDX58-202ENST00000379883 APLP2Q06481 763 aa10.41□□□□□ -0.74
DDX58-202ENST00000379883 HNRNPUL2Q1KMD3 747 aaKnown RBP10.36□□□□□ -0.75
DDX58-202ENST00000379883 CEP162Q5TB80 1403 aa10.36□□□□□ -0.75
DDX58-202ENST00000379883 TNIKQ9UKE5 1360 aa10.35□□□□□ -0.75
DDX58-202ENST00000379883 UBTFP17480 764 aaKnown RBP10.35□□□□□ -0.75
DDX58-202ENST00000379883 PRKCSHP14314 528 aaPredicted RBP10.32□□□□□ -0.76
DDX58-202ENST00000379883 FKBP8Q14318 412 aa10.32□□□□□ -0.76
DDX58-202ENST00000379883 RBM19Q9Y4C8 960 aaKnown RBP10.31□□□□□ -0.76
DDX58-202ENST00000379883 EEA1Q15075 1411 aa10.31□□□□□ -0.76
DDX58-202ENST00000379883 BCANQ96GW7 911 aa10.3□□□□□ -0.76
DDX58-202ENST00000379883 CDK11AQ9UQ88 783 aaPredicted RBP10.27□□□□□ -0.76
DDX58-202ENST00000379883 FANCIQ9NVI1 1328 aa10.23□□□□□ -0.77
DDX58-202ENST00000379883 GOLGA3Q08378 1498 aa10.21□□□□□ -0.77
DDX58-202ENST00000379883 SCRIBQ14160 1630 aa10.21□□□□□ -0.78
DDX58-202ENST00000379883 ERICH6BQ5W0A0 696 aa10.19□□□□□ -0.78
DDX58-202ENST00000379883 DEKP35659 375 aaKnown RBP10.15□□□□□ -0.78
DDX58-202ENST00000379883 RTL5Q5HYW3 569 aaPredicted RBP10.14□□□□□ -0.79
DDX58-202ENST00000379883 ANP32CO43423 234 aa10.14□□□□□ -0.79
DDX58-202ENST00000379883 CCER2I3L3R5 266 aa10.12□□□□□ -0.79
DDX58-202ENST00000379883 CLIP1P30622 1438 aa10.11□□□□□ -0.79
DDX58-202ENST00000379883 DHX57Q6P158 1386 aaKnown RBP10.11□□□□□ -0.79
DDX58-202ENST00000379883 VPS8Q8N3P4 1428 aa10.1□□□□□ -0.79
DDX58-202ENST00000379883 ITGAEP38570 1179 aa10.1□□□□□ -0.79
DDX58-202ENST00000379883 CEP164Q9UPV0 1460 aa10.1□□□□□ -0.79
DDX58-202ENST00000379883 CCDC88BA6NC98 1476 aa10.08□□□□□ -0.8
DDX58-202ENST00000379883 MSH5O43196 834 aa10.07□□□□□ -0.8
DDX58-202ENST00000379883 SOGA1O94964 1423 aa10.07□□□□□ -0.8
DDX58-202ENST00000379883 MROH2BQ7Z745 1585 aa10.07□□□□□ -0.8
DDX58-202ENST00000379883 BAZ1AQ9NRL2 1556 aaPredicted RBP10.06□□□□□ -0.8
DDX58-202ENST00000379883 DDX10Q13206 875 aaKnown RBP10.05□□□□□ -0.8
DDX58-202ENST00000379883 NOP58Q9Y2X3 529 aaKnown RBP10.04□□□□□ -0.8
DDX58-202ENST00000379883 CECR2Q9BXF3 1484 aa10.03□□□□□ -0.8
DDX58-202ENST00000379883 ABCC8Q09428 1581 aa10.03□□□□□ -0.8
DDX58-202ENST00000379883 PPP4R2Q9NY27 417 aa10.03□□□□□ -0.8
DDX58-202ENST00000379883 TRIM52Q96A61 297 aa10.03□□□□□ -0.8
DDX58-202ENST00000379883 ANP32AP39687 249 aaKnown RBP10.02□□□□□ -0.81
DDX58-202ENST00000379883 TIMELESSQ9UNS1 1208 aa10.02□□□□□ -0.81
DDX58-202ENST00000379883 WIZO95785 1651 aa10.01□□□□□ -0.81
DDX58-202ENST00000379883 BAZ1BQ9UIG0 1483 aaKnown RBP10.01□□□□□ -0.81
DDX58-202ENST00000379883 EIF4G1Q04637 1599 aaKnown RBP10□□□□□ -0.81
DDX58-202ENST00000379883 KCNH8Q96L42 1107 aa10□□□□□ -0.81
DDX58-202ENST00000379883 NBR1Q14596 966 aa9.98□□□□□ -0.81
DDX58-202ENST00000379883 KIF21BO75037 1637 aa9.97□□□□□ -0.81
DDX58-202ENST00000379883 TOP2AP11388 1531 aaKnown RBP9.96□□□□□ -0.81
DDX58-202ENST00000379883 ZBTB47Q9UFB7 747 aaPredicted RBP9.96□□□□□ -0.81
DDX58-202ENST00000379883 HNRNPUQ00839 825 aaKnown RBP eCLIP9.96□□□□□ -0.82
DDX58-202ENST00000379883 ANO8Q9HCE9 1232 aaPredicted RBP9.96□□□□□ -0.82
DDX58-202ENST00000379883 RANGAP1P46060 587 aaPredicted RBP9.94□□□□□ -0.82
DDX58-202ENST00000379883 NACADO15069 1562 aa9.93□□□□□ -0.82
DDX58-202ENST00000379883 PPP1R15AO75807 674 aaPredicted RBP9.93□□□□□ -0.82
DDX58-202ENST00000379883 CCNB3Q8WWL7 1395 aa9.92□□□□□ -0.82
DDX58-202ENST00000379883 RUSC2Q8N2Y8 1516 aa9.91□□□□□ -0.82
DDX58-202ENST00000379883 CUX2O14529 1486 aa9.91□□□□□ -0.82
DDX58-202ENST00000379883 RRBP1Q9P2E9 1410 aaKnown RBP9.91□□□□□ -0.82
DDX58-202ENST00000379883 UBE2Q2Q8WVN8 375 aa9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 119 ms