RNA–Protein interactions for RNA: ENST00000423368.6

CNOT4-205, Transcript of CCR4-NOT transcription complex subunit 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CNOT4, Length 3,297 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4-205ENST00000423368 CHIC1Q5VXU3 224 aa13.77□□□□□ -0.21
CNOT4-205ENST00000423368 AEBP2Q6ZN18 517 aaPredicted RBP13.3□□□□□ -0.28
CNOT4-205ENST00000423368 PHF23Q9BUL5 403 aaPredicted RBP12.36□□□□□ -0.43
CNOT4-205ENST00000423368 PELP1Q8IZL8 1130 aaKnown RBP11.99□□□□□ -0.49
CNOT4-205ENST00000423368 PPARGC1BQ86YN6 1023 aaKnown RBP11.8□□□□□ -0.52
CNOT4-205ENST00000423368 EHMT2Q96KQ7 1210 aa11.69□□□□□ -0.54
CNOT4-205ENST00000423368 HRCP23327 699 aa11.62□□□□□ -0.55
CNOT4-205ENST00000423368 MYT1Q01538 1121 aa11.6□□□□□ -0.55
CNOT4-205ENST00000423368 PLPPR3Q6T4P5 718 aa11.54□□□□□ -0.56
CNOT4-205ENST00000423368 SCAF1Q9H7N4 1312 aaKnown RBP11.53□□□□□ -0.56
CNOT4-205ENST00000423368 PCGF6Q9BYE7 350 aa11.44□□□□□ -0.58
CNOT4-205ENST00000423368 SLC24A1O60721 1099 aa11.33□□□□□ -0.6
CNOT4-205ENST00000423368 PRKCSHP14314 528 aaPredicted RBP11.32□□□□□ -0.6
CNOT4-205ENST00000423368 KCNA4P22459 653 aa11.29□□□□□ -0.6
CNOT4-205ENST00000423368 BCL11AQ9H165 835 aa11.25□□□□□ -0.61
CNOT4-205ENST00000423368 FAM9AQ8IZU1 332 aaPredicted RBP11.18□□□□□ -0.62
CNOT4-205ENST00000423368 CSRNP3Q8WYN3 585 aa11.14□□□□□ -0.63
CNOT4-205ENST00000423368 GTF3C3Q9Y5Q9 886 aa11.09□□□□□ -0.63
CNOT4-205ENST00000423368 NEUROD1Q13562 356 aa11.03□□□□□ -0.64
CNOT4-205ENST00000423368 ADRA2BP18089 450 aa10.98□□□□□ -0.65
CNOT4-205ENST00000423368 TTBK1Q5TCY1 1321 aaPredicted RBP10.94□□□□□ -0.66
CNOT4-205ENST00000423368 ACIN1Q9UKV3 1341 aaKnown RBP10.93□□□□□ -0.66
CNOT4-205ENST00000423368 CENPBP07199 599 aaPredicted RBP10.92□□□□□ -0.66
CNOT4-205ENST00000423368 SENP3Q9H4L4 574 aaPredicted RBP10.91□□□□□ -0.66
CNOT4-205ENST00000423368 RTN4Q9NQC3 1192 aaKnown RBP10.84□□□□□ -0.67
CNOT4-205ENST00000423368 YTHDC1Q96MU7 727 aaKnown RBP10.82□□□□□ -0.68
CNOT4-205ENST00000423368 SLC4A1APQ9BWU0 796 aaKnown RBP10.8□□□□□ -0.68
CNOT4-205ENST00000423368 ERICH6Q7L0X2 663 aa10.76□□□□□ -0.69
CNOT4-205ENST00000423368 SUPT5HO00267 1087 aaKnown RBP10.73□□□□□ -0.69
CNOT4-205ENST00000423368 ANP32EQ9BTT0 268 aa10.66□□□□□ -0.7
CNOT4-205ENST00000423368 AMER1Q5JTC6 1135 aaPredicted RBP10.65□□□□□ -0.7
CNOT4-205ENST00000423368 ANO8Q9HCE9 1232 aaPredicted RBP10.64□□□□□ -0.71
CNOT4-205ENST00000423368 PPP6R1Q9UPN7 881 aa10.61□□□□□ -0.71
CNOT4-205ENST00000423368 APLP2Q06481 763 aa10.6□□□□□ -0.71
CNOT4-205ENST00000423368 CCDC136Q96JN2 1154 aa10.58□□□□□ -0.72
CNOT4-205ENST00000423368 ZEB1P37275 1124 aaPredicted RBP10.56□□□□□ -0.72
CNOT4-205ENST00000423368 LOC105371045A0A1W2PR82 267 aa10.54□□□□□ -0.72
CNOT4-205ENST00000423368 MYO15BQ96JP2 1530 aa10.53□□□□□ -0.72
CNOT4-205ENST00000423368 TRIM26Q12899 539 aaPredicted RBP10.5□□□□□ -0.73
CNOT4-205ENST00000423368 DIEXFQ68CQ4 756 aaKnown RBP10.5□□□□□ -0.73
CNOT4-205ENST00000423368 ZBTB22O15209 634 aa10.49□□□□□ -0.73
CNOT4-205ENST00000423368 SHROOM4Q9ULL8 1493 aa10.46□□□□□ -0.74
CNOT4-205ENST00000423368 PLEKHG5O94827 1062 aa10.41□□□□□ -0.74
CNOT4-205ENST00000423368 SALL2Q9Y467 1007 aaPredicted RBP10.39□□□□□ -0.75
CNOT4-205ENST00000423368 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.39□□□□□ -0.75
CNOT4-205ENST00000423368 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.37□□□□□ -0.75
CNOT4-205ENST00000423368 BCANQ96GW7 911 aa10.37□□□□□ -0.75
CNOT4-205ENST00000423368 TSHZ2Q9NRE2 1034 aa10.36□□□□□ -0.75
CNOT4-205ENST00000423368 PPP4R3CPQ6ZMV5 832 aa10.34□□□□□ -0.75
CNOT4-205ENST00000423368 EIF5BO60841 1220 aaKnown RBP10.32□□□□□ -0.76
CNOT4-205ENST00000423368 CCER1Q8TC90 406 aaPredicted RBP10.3□□□□□ -0.76
CNOT4-205ENST00000423368 NPM3O75607 178 aaKnown RBP10.25□□□□□ -0.77
CNOT4-205ENST00000423368 SUPT16HQ9Y5B9 1047 aaKnown RBP10.23□□□□□ -0.77
CNOT4-205ENST00000423368 MIER1Q8N108 512 aa10.21□□□□□ -0.78
CNOT4-205ENST00000423368 NCBP3Q53F19 620 aaKnown RBP10.2□□□□□ -0.78
CNOT4-205ENST00000423368 FOXD1Q16676 465 aa10.15□□□□□ -0.78
CNOT4-205ENST00000423368 DEKP35659 375 aaKnown RBP10.15□□□□□ -0.78
CNOT4-205ENST00000423368 ITGAEP38570 1179 aa10.14□□□□□ -0.79
CNOT4-205ENST00000423368 UBE2Q2Q8WVN8 375 aa10.13□□□□□ -0.79
CNOT4-205ENST00000423368 NBR1Q14596 966 aa10.11□□□□□ -0.79
CNOT4-205ENST00000423368 PODXL2Q9NZ53 605 aa10.11□□□□□ -0.79
CNOT4-205ENST00000423368 PKNOX2Q96KN3 472 aa10.1□□□□□ -0.79
CNOT4-205ENST00000423368 RBM19Q9Y4C8 960 aaKnown RBP10.1□□□□□ -0.79
CNOT4-205ENST00000423368 MSH5O43196 834 aa10.08□□□□□ -0.8
CNOT4-205ENST00000423368 IL27Q8NEV9 243 aa10.07□□□□□ -0.8
CNOT4-205ENST00000423368 DCAF1Q9Y4B6 1507 aa10.05□□□□□ -0.8
CNOT4-205ENST00000423368 NISCHQ9Y2I1 1504 aa10.04□□□□□ -0.8
CNOT4-205ENST00000423368 TIMELESSQ9UNS1 1208 aa10□□□□□ -0.81
CNOT4-205ENST00000423368 ZNF316A6NFI3 1004 aaPredicted RBP9.99□□□□□ -0.81
CNOT4-205ENST00000423368 FKBP8Q14318 412 aa9.99□□□□□ -0.81
CNOT4-205ENST00000423368 FOXD4L1Q9NU39 408 aa9.99□□□□□ -0.81
CNOT4-205ENST00000423368 A0A0U1RQG5 324 aaPredicted RBP9.98□□□□□ -0.81
CNOT4-205ENST00000423368 CCDC180Q9P1Z9 1646 aa9.97□□□□□ -0.81
CNOT4-205ENST00000423368 TRIM41Q8WV44 630 aa9.97□□□□□ -0.81
CNOT4-205ENST00000423368 DAXXQ9UER7 740 aaPredicted RBP9.88□□□□□ -0.83
CNOT4-205ENST00000423368 VSIG10Q8N0Z9 540 aa9.86□□□□□ -0.83
CNOT4-205ENST00000423368 PLCB2Q00722 1185 aa9.84□□□□□ -0.83
CNOT4-205ENST00000423368 IRX6P78412 446 aaPredicted RBP9.83□□□□□ -0.84
CNOT4-205ENST00000423368 KCNH8Q96L42 1107 aa9.83□□□□□ -0.84
CNOT4-205ENST00000423368 TAOK2Q9UL54 1235 aa9.81□□□□□ -0.84
CNOT4-205ENST00000423368 NEFLP07196 543 aa9.81□□□□□ -0.84
CNOT4-205ENST00000423368 RTL5Q5HYW3 569 aaPredicted RBP9.79□□□□□ -0.84
CNOT4-205ENST00000423368 CNKSR2Q8WXI2 1034 aa9.79□□□□□ -0.84
CNOT4-205ENST00000423368 ZMYND15Q9H091 742 aa9.79□□□□□ -0.84
CNOT4-205ENST00000423368 ERICH6BQ5W0A0 696 aa9.76□□□□□ -0.85
CNOT4-205ENST00000423368 PAK3O75914 559 aaPredicted RBP9.74□□□□□ -0.85
CNOT4-205ENST00000423368 PIAS4Q8N2W9 510 aaPredicted RBP9.74□□□□□ -0.85
CNOT4-205ENST00000423368 TRIM52Q96A61 297 aa9.72□□□□□ -0.85
CNOT4-205ENST00000423368 DNAJC5BQ9UF47 199 aa9.72□□□□□ -0.85
CNOT4-205ENST00000423368 MYT1LQ9UL68 1186 aa9.71□□□□□ -0.85
CNOT4-205ENST00000423368 BRPF3Q9ULD4 1205 aa9.71□□□□□ -0.86
CNOT4-205ENST00000423368 CDK11AQ9UQ88 783 aaPredicted RBP9.71□□□□□ -0.86
CNOT4-205ENST00000423368 HAP1P54257 671 aaPredicted RBP9.67□□□□□ -0.86
CNOT4-205ENST00000423368 CLSPNQ9HAW4 1339 aa9.67□□□□□ -0.86
CNOT4-205ENST00000423368 C11orf95C9JLR9 678 aaPredicted RBP9.67□□□□□ -0.86
CNOT4-205ENST00000423368 PDE4CQ08493 712 aa9.67□□□□□ -0.86
CNOT4-205ENST00000423368 HNRNPUL2Q1KMD3 747 aaKnown RBP9.66□□□□□ -0.86
CNOT4-205ENST00000423368 ARID4BQ4LE39 1312 aaPredicted RBP9.66□□□□□ -0.86
CNOT4-205ENST00000423368 BCL11BQ9C0K0 894 aaPredicted RBP9.65□□□□□ -0.86
CNOT4-205ENST00000423368 NOP58Q9Y2X3 529 aaKnown RBP9.65□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 6.9 ms