RNA–Protein interactions for RNA: ENST00000404025.2

NLRC4-204, Transcript of NLR family CARD domain containing 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene NLRC4, Length 3,581 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NLRC4-204ENST00000404025 NISCHQ9Y2I1 1504 aa15.62■□□□□ 0.09
NLRC4-204ENST00000404025 SHROOM4Q9ULL8 1493 aa13.48□□□□□ -0.25
NLRC4-204ENST00000404025 DCAF8L2P0C7V8 631 aa13.3□□□□□ -0.28
NLRC4-204ENST00000404025 SUPT5HO00267 1087 aaKnown RBP13.24□□□□□ -0.29
NLRC4-204ENST00000404025 CCDC180Q9P1Z9 1646 aa13.2□□□□□ -0.3
NLRC4-204ENST00000404025 ZCCHC6Q5VYS8 1495 aaKnown RBP13.16□□□□□ -0.3
NLRC4-204ENST00000404025 DCAF1Q9Y4B6 1507 aa12.73□□□□□ -0.37
NLRC4-204ENST00000404025 CHIC1Q5VXU3 224 aa12.72□□□□□ -0.37
NLRC4-204ENST00000404025 MYO15BQ96JP2 1530 aa12.57□□□□□ -0.4
NLRC4-204ENST00000404025 ABCC9O60706 1549 aa12.51□□□□□ -0.41
NLRC4-204ENST00000404025 SCRIBQ14160 1630 aa12.51□□□□□ -0.41
NLRC4-204ENST00000404025 LOC105371045A0A1W2PR82 267 aa12.41□□□□□ -0.42
NLRC4-204ENST00000404025 RSF1Q96T23 1441 aaPredicted RBP12.37□□□□□ -0.43
NLRC4-204ENST00000404025 PCGF6Q9BYE7 350 aa12.35□□□□□ -0.43
NLRC4-204ENST00000404025 TRIM41Q8WV44 630 aa12.3□□□□□ -0.44
NLRC4-204ENST00000404025 NACADO15069 1562 aa12.3□□□□□ -0.44
NLRC4-204ENST00000404025 FAM9AQ8IZU1 332 aaPredicted RBP12.27□□□□□ -0.45
NLRC4-204ENST00000404025 CECR2Q9BXF3 1484 aa12.24□□□□□ -0.45
NLRC4-204ENST00000404025 EHMT2Q96KQ7 1210 aa12.23□□□□□ -0.45
NLRC4-204ENST00000404025 HRCP23327 699 aa12.22□□□□□ -0.45
NLRC4-204ENST00000404025 RB1CC1Q8TDY2 1594 aa12.2□□□□□ -0.46
NLRC4-204ENST00000404025 MROH2BQ7Z745 1585 aa12.16□□□□□ -0.46
NLRC4-204ENST00000404025 WIZO95785 1651 aa12.07□□□□□ -0.48
NLRC4-204ENST00000404025 TRIM26Q12899 539 aaPredicted RBP12.07□□□□□ -0.48
NLRC4-204ENST00000404025 PPARGC1BQ86YN6 1023 aaKnown RBP12.04□□□□□ -0.48
NLRC4-204ENST00000404025 PABPN1Q86U42 306 aaKnown RBP eCLIP12.03□□□□□ -0.48
NLRC4-204ENST00000404025 BAZ1AQ9NRL2 1556 aaPredicted RBP12□□□□□ -0.49
NLRC4-204ENST00000404025 SMARCA4P51532 1647 aa11.88□□□□□ -0.51
NLRC4-204ENST00000404025 CCDC88BA6NC98 1476 aa11.87□□□□□ -0.51
NLRC4-204ENST00000404025 TOP2AP11388 1531 aaKnown RBP11.86□□□□□ -0.51
NLRC4-204ENST00000404025 UNC13AQ9UPW8 1703 aa11.84□□□□□ -0.51
NLRC4-204ENST00000404025 ABCC8Q09428 1581 aa11.83□□□□□ -0.52
NLRC4-204ENST00000404025 TTBK1Q5TCY1 1321 aaPredicted RBP11.8□□□□□ -0.52
NLRC4-204ENST00000404025 SMARCA2P51531 1590 aa11.79□□□□□ -0.52
NLRC4-204ENST00000404025 ZEB1P37275 1124 aaPredicted RBP11.78□□□□□ -0.52
NLRC4-204ENST00000404025 UBTFP17480 764 aaKnown RBP11.77□□□□□ -0.53
NLRC4-204ENST00000404025 EIF4G1Q04637 1599 aaKnown RBP11.76□□□□□ -0.53
NLRC4-204ENST00000404025 BICRAQ9NZM4 1560 aa11.75□□□□□ -0.53
NLRC4-204ENST00000404025 SOGA1O94964 1423 aa11.74□□□□□ -0.53
NLRC4-204ENST00000404025 CSRNP3Q8WYN3 585 aa11.73□□□□□ -0.53
NLRC4-204ENST00000404025 RUSC2Q8N2Y8 1516 aa11.66□□□□□ -0.54
NLRC4-204ENST00000404025 WRNQ14191 1432 aaPredicted RBP eCLIP11.66□□□□□ -0.54
NLRC4-204ENST00000404025 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.66□□□□□ -0.54
NLRC4-204ENST00000404025 CCER1Q8TC90 406 aaPredicted RBP11.66□□□□□ -0.54
NLRC4-204ENST00000404025 CEP162Q5TB80 1403 aa11.65□□□□□ -0.54
NLRC4-204ENST00000404025 BAZ1BQ9UIG0 1483 aaKnown RBP11.65□□□□□ -0.54
NLRC4-204ENST00000404025 ATAD2BQ9ULI0 1458 aa11.64□□□□□ -0.55
NLRC4-204ENST00000404025 RANGAP1P46060 587 aaPredicted RBP11.63□□□□□ -0.55
NLRC4-204ENST00000404025 EEA1Q15075 1411 aa11.62□□□□□ -0.55
NLRC4-204ENST00000404025 TNIKQ9UKE5 1360 aa11.62□□□□□ -0.55
NLRC4-204ENST00000404025 PEG3Q9GZU2 1588 aa11.59□□□□□ -0.55
NLRC4-204ENST00000404025 GOLGA3Q08378 1498 aa11.57□□□□□ -0.56
NLRC4-204ENST00000404025 SYNJ1O43426 1573 aa11.53□□□□□ -0.56
NLRC4-204ENST00000404025 APLP2Q06481 763 aa11.52□□□□□ -0.57
NLRC4-204ENST00000404025 CEP164Q9UPV0 1460 aa11.5□□□□□ -0.57
NLRC4-204ENST00000404025 CLIP1P30622 1438 aa11.47□□□□□ -0.57
NLRC4-204ENST00000404025 HNRNPUL2Q1KMD3 747 aaKnown RBP11.47□□□□□ -0.57
NLRC4-204ENST00000404025 RAPGEF2Q9Y4G8 1499 aa11.43□□□□□ -0.58
NLRC4-204ENST00000404025 NCAPD3P42695 1498 aa11.41□□□□□ -0.58
NLRC4-204ENST00000404025 KIF21BO75037 1637 aa11.39□□□□□ -0.59
NLRC4-204ENST00000404025 VPS8Q8N3P4 1428 aa11.37□□□□□ -0.59
NLRC4-204ENST00000404025 TOP2BQ02880 1626 aa11.37□□□□□ -0.59
NLRC4-204ENST00000404025 HMGXB3Q12766 1538 aa11.35□□□□□ -0.59
NLRC4-204ENST00000404025 DIEXFQ68CQ4 756 aaKnown RBP11.34□□□□□ -0.59
NLRC4-204ENST00000404025 KIF27Q86VH2 1401 aa11.32□□□□□ -0.6
NLRC4-204ENST00000404025 CUX1P39880 1505 aa11.31□□□□□ -0.6
NLRC4-204ENST00000404025 CFTRP13569 1480 aa11.3□□□□□ -0.6
NLRC4-204ENST00000404025 BIVM-ERCC5R4GMW8 1640 aa11.29□□□□□ -0.6
NLRC4-204ENST00000404025 PRXQ9BXM0 1461 aa11.28□□□□□ -0.6
NLRC4-204ENST00000404025 KANK4Q5T7N3 995 aaPredicted RBP11.26□□□□□ -0.61
NLRC4-204ENST00000404025 ZNF316A6NFI3 1004 aaPredicted RBP11.25□□□□□ -0.61
NLRC4-204ENST00000404025 CADPSQ9ULU8 1353 aa11.25□□□□□ -0.61
NLRC4-204ENST00000404025 CUX2O14529 1486 aa11.24□□□□□ -0.61
NLRC4-204ENST00000404025 ERICH3Q5RHP9 1530 aa11.24□□□□□ -0.61
NLRC4-204ENST00000404025 ITGAEP38570 1179 aa11.24□□□□□ -0.61
NLRC4-204ENST00000404025 ATP1B4Q9UN42 357 aaPredicted RBP11.22□□□□□ -0.61
NLRC4-204ENST00000404025 SCAF1Q9H7N4 1312 aaKnown RBP11.22□□□□□ -0.61
NLRC4-204ENST00000404025 ARAP1Q96P48 1450 aa11.21□□□□□ -0.61
NLRC4-204ENST00000404025 P3H3Q8IVL6 736 aa11.19□□□□□ -0.62
NLRC4-204ENST00000404025 IGF1RP08069 1367 aa11.19□□□□□ -0.62
NLRC4-204ENST00000404025 CARMIL1Q5VZK9 1371 aa11.18□□□□□ -0.62
NLRC4-204ENST00000404025 CENPBP07199 599 aaPredicted RBP11.18□□□□□ -0.62
NLRC4-204ENST00000404025 FGD5Q6ZNL6 1462 aa11.16□□□□□ -0.62
NLRC4-204ENST00000404025 ACIN1Q9UKV3 1341 aaKnown RBP11.16□□□□□ -0.62
NLRC4-204ENST00000404025 CC2D2AQ9P2K1 1620 aa11.16□□□□□ -0.62
NLRC4-204ENST00000404025 NEUROD1Q13562 356 aa11.16□□□□□ -0.62
NLRC4-204ENST00000404025 YTHDC1Q96MU7 727 aaKnown RBP11.16□□□□□ -0.62
NLRC4-204ENST00000404025 ARHGAP35Q9NRY4 1499 aa11.15□□□□□ -0.62
NLRC4-204ENST00000404025 FANCD2Q9BXW9 1451 aa11.13□□□□□ -0.63
NLRC4-204ENST00000404025 CCNB3Q8WWL7 1395 aa11.1□□□□□ -0.63
NLRC4-204ENST00000404025 FAM50AQ14320 339 aaKnown RBP11.1□□□□□ -0.63
NLRC4-204ENST00000404025 RAD54L2Q9Y4B4 1467 aa11.09□□□□□ -0.63
NLRC4-204ENST00000404025 MIER1Q8N108 512 aa11.09□□□□□ -0.63
NLRC4-204ENST00000404025 NESP48681 1621 aa11.09□□□□□ -0.63
NLRC4-204ENST00000404025 DHX57Q6P158 1386 aaKnown RBP11.08□□□□□ -0.64
NLRC4-204ENST00000404025 PELP1Q8IZL8 1130 aaKnown RBP11.07□□□□□ -0.64
NLRC4-204ENST00000404025 GTF3C3Q9Y5Q9 886 aa11.07□□□□□ -0.64
NLRC4-204ENST00000404025 PRDM2Q13029 1718 aa11.06□□□□□ -0.64
NLRC4-204ENST00000404025 RRBP1Q9P2E9 1410 aaKnown RBP11.06□□□□□ -0.64
NLRC4-204ENST00000404025 CLSPNQ9HAW4 1339 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms