Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 AC120498.9-201ENST00000339021 3867 ntBASIC19.15■□□□□ 0.66
VPS9D1Q9Y2B5 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VPS9D1Q9Y2B5 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC19.15■□□□□ 0.66
VPS9D1Q9Y2B5 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
VPS9D1Q9Y2B5 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VPS9D1Q9Y2B5 SDHAP1-207ENST00000440850 2000 ntBASIC19.15■□□□□ 0.66
VPS9D1Q9Y2B5 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC19.15■□□□□ 0.66
VPS9D1Q9Y2B5 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC19.15■□□□□ 0.66
VPS9D1Q9Y2B5 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC19.15■□□□□ 0.66
VPS9D1Q9Y2B5 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
VPS9D1Q9Y2B5 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.66
VPS9D1Q9Y2B5 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
VPS9D1Q9Y2B5 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
VPS9D1Q9Y2B5 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VPS9D1Q9Y2B5 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
VPS9D1Q9Y2B5 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
VPS9D1Q9Y2B5 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC19.14■□□□□ 0.65
VPS9D1Q9Y2B5 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
VPS9D1Q9Y2B5 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VPS9D1Q9Y2B5 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VPS9D1Q9Y2B5 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VPS9D1Q9Y2B5 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
VPS9D1Q9Y2B5 LY6E-205ENST00000519611 635 ntTSL 3 BASIC19.14■□□□□ 0.65
VPS9D1Q9Y2B5 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC19.14■□□□□ 0.65
VPS9D1Q9Y2B5 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC19.14■□□□□ 0.65
VPS9D1Q9Y2B5 AC233263.1-201ENST00000578059 224 ntBASIC19.14■□□□□ 0.65
VPS9D1Q9Y2B5 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC19.14■□□□□ 0.65
VPS9D1Q9Y2B5 RN7SL471P-201ENST00000580476 299 ntBASIC19.14■□□□□ 0.65
VPS9D1Q9Y2B5 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
VPS9D1Q9Y2B5 HCG11-201ENST00000411553 5696 ntBASIC19.14■□□□□ 0.65
VPS9D1Q9Y2B5 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VPS9D1Q9Y2B5 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC19.14■□□□□ 0.65
VPS9D1Q9Y2B5 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
VPS9D1Q9Y2B5 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
VPS9D1Q9Y2B5 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
VPS9D1Q9Y2B5 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC19.14■□□□□ 0.65
VPS9D1Q9Y2B5 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VPS9D1Q9Y2B5 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VPS9D1Q9Y2B5 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
VPS9D1Q9Y2B5 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
VPS9D1Q9Y2B5 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VPS9D1Q9Y2B5 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
VPS9D1Q9Y2B5 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VPS9D1Q9Y2B5 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
VPS9D1Q9Y2B5 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VPS9D1Q9Y2B5 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC19.13■□□□□ 0.65
VPS9D1Q9Y2B5 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
VPS9D1Q9Y2B5 AL160286.2-201ENST00000567150 934 ntBASIC19.13■□□□□ 0.65
VPS9D1Q9Y2B5 AC006058.3-201ENST00000606217 1069 ntBASIC19.13■□□□□ 0.65
VPS9D1Q9Y2B5 AC110285.5-201ENST00000611501 352 ntBASIC19.13■□□□□ 0.65
VPS9D1Q9Y2B5 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
VPS9D1Q9Y2B5 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
VPS9D1Q9Y2B5 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VPS9D1Q9Y2B5 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VPS9D1Q9Y2B5 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
VPS9D1Q9Y2B5 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC19.13■□□□□ 0.65
VPS9D1Q9Y2B5 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC19.13■□□□□ 0.65
VPS9D1Q9Y2B5 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VPS9D1Q9Y2B5 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
VPS9D1Q9Y2B5 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VPS9D1Q9Y2B5 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC19.12■□□□□ 0.65
VPS9D1Q9Y2B5 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VPS9D1Q9Y2B5 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VPS9D1Q9Y2B5 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VPS9D1Q9Y2B5 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
VPS9D1Q9Y2B5 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
VPS9D1Q9Y2B5 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC19.12■□□□□ 0.65
VPS9D1Q9Y2B5 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VPS9D1Q9Y2B5 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC19.12■□□□□ 0.65
VPS9D1Q9Y2B5 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
VPS9D1Q9Y2B5 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VPS9D1Q9Y2B5 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VPS9D1Q9Y2B5 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VPS9D1Q9Y2B5 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VPS9D1Q9Y2B5 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC19.12■□□□□ 0.65
VPS9D1Q9Y2B5 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
VPS9D1Q9Y2B5 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
VPS9D1Q9Y2B5 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VPS9D1Q9Y2B5 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC19.12■□□□□ 0.65
VPS9D1Q9Y2B5 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC19.12■□□□□ 0.65
VPS9D1Q9Y2B5 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC19.12■□□□□ 0.65
VPS9D1Q9Y2B5 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC19.12■□□□□ 0.65
VPS9D1Q9Y2B5 AC124016.1-201ENST00000609552 612 ntBASIC19.12■□□□□ 0.65
VPS9D1Q9Y2B5 AC073648.6-201ENST00000641589 218 ntBASIC19.12■□□□□ 0.65
VPS9D1Q9Y2B5 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VPS9D1Q9Y2B5 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC19.12■□□□□ 0.65
VPS9D1Q9Y2B5 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
VPS9D1Q9Y2B5 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
VPS9D1Q9Y2B5 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC19.12■□□□□ 0.65
VPS9D1Q9Y2B5 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
VPS9D1Q9Y2B5 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VPS9D1Q9Y2B5 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
VPS9D1Q9Y2B5 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VPS9D1Q9Y2B5 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VPS9D1Q9Y2B5 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
VPS9D1Q9Y2B5 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VPS9D1Q9Y2B5 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
VPS9D1Q9Y2B5 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VPS9D1Q9Y2B5 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC19.11■□□□□ 0.65
VPS9D1Q9Y2B5 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms