Protein–RNA interactions for Protein: P32297

CHRNA3, Neuronal acetylcholine receptor subunit alpha-3, humanhuman

Predictions only

Length 505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA3P32297 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC20.29■□□□□ 0.84
CHRNA3P32297 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC20.29■□□□□ 0.84
CHRNA3P32297 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC20.29■□□□□ 0.84
CHRNA3P32297 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC20.29■□□□□ 0.84
CHRNA3P32297 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
CHRNA3P32297 CROCCP3-202ENST00000420820 1947 ntBASIC20.29■□□□□ 0.84
CHRNA3P32297 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CHRNA3P32297 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
CHRNA3P32297 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CHRNA3P32297 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CHRNA3P32297 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CHRNA3P32297 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CHRNA3P32297 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CHRNA3P32297 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CHRNA3P32297 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CHRNA3P32297 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
CHRNA3P32297 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CHRNA3P32297 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
CHRNA3P32297 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC20.29■□□□□ 0.84
CHRNA3P32297 RPPH1-201ENST00000516869 333 ntBASIC20.29■□□□□ 0.84
CHRNA3P32297 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC20.29■□□□□ 0.84
CHRNA3P32297 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC20.29■□□□□ 0.84
CHRNA3P32297 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CHRNA3P32297 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC20.29■□□□□ 0.84
CHRNA3P32297 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC20.29■□□□□ 0.84
CHRNA3P32297 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CHRNA3P32297 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
CHRNA3P32297 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC20.29■□□□□ 0.84
CHRNA3P32297 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CHRNA3P32297 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CHRNA3P32297 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CHRNA3P32297 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CHRNA3P32297 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CHRNA3P32297 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC20.29■□□□□ 0.84
CHRNA3P32297 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
CHRNA3P32297 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHRNA3P32297 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC20.28■□□□□ 0.84
CHRNA3P32297 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHRNA3P32297 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC20.28■□□□□ 0.84
CHRNA3P32297 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC20.28■□□□□ 0.84
CHRNA3P32297 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
CHRNA3P32297 PEX7-202ENST00000367756 680 ntTSL 3 BASIC20.28■□□□□ 0.84
CHRNA3P32297 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC20.28■□□□□ 0.84
CHRNA3P32297 RNF121-214ENST00000533380 870 ntTSL 3 BASIC20.28■□□□□ 0.84
CHRNA3P32297 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CHRNA3P32297 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC20.28■□□□□ 0.84
CHRNA3P32297 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHRNA3P32297 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC20.28■□□□□ 0.84
CHRNA3P32297 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
CHRNA3P32297 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHRNA3P32297 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHRNA3P32297 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC20.28■□□□□ 0.84
CHRNA3P32297 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC20.28■□□□□ 0.84
CHRNA3P32297 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
CHRNA3P32297 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
CHRNA3P32297 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC20.27■□□□□ 0.84
CHRNA3P32297 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC20.27■□□□□ 0.84
CHRNA3P32297 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CHRNA3P32297 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CHRNA3P32297 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CHRNA3P32297 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC20.27■□□□□ 0.84
CHRNA3P32297 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CHRNA3P32297 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CHRNA3P32297 AL161938.1-201ENST00000569833 2180 ntBASIC20.27■□□□□ 0.84
CHRNA3P32297 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
CHRNA3P32297 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CHRNA3P32297 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CHRNA3P32297 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC20.27■□□□□ 0.84
CHRNA3P32297 AC018553.1-201ENST00000616682 1458 ntBASIC20.27■□□□□ 0.84
CHRNA3P32297 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC20.27■□□□□ 0.84
CHRNA3P32297 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CHRNA3P32297 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
CHRNA3P32297 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CHRNA3P32297 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CHRNA3P32297 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC20.27■□□□□ 0.84
CHRNA3P32297 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CHRNA3P32297 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC20.27■□□□□ 0.84
CHRNA3P32297 AC093827.2-201ENST00000512654 315 ntBASIC20.27■□□□□ 0.84
CHRNA3P32297 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC20.27■□□□□ 0.84
CHRNA3P32297 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CHRNA3P32297 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC20.27■□□□□ 0.84
CHRNA3P32297 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC20.27■□□□□ 0.84
CHRNA3P32297 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
CHRNA3P32297 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC20.27■□□□□ 0.84
CHRNA3P32297 AP006294.2-201ENST00000641667 209 ntBASIC20.27■□□□□ 0.84
CHRNA3P32297 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CHRNA3P32297 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CHRNA3P32297 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
CHRNA3P32297 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC20.27■□□□□ 0.83
CHRNA3P32297 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.83
CHRNA3P32297 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
CHRNA3P32297 NEFHP1-201ENST00000412845 2629 ntBASIC20.26■□□□□ 0.83
CHRNA3P32297 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
CHRNA3P32297 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHRNA3P32297 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHRNA3P32297 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC20.26■□□□□ 0.83
CHRNA3P32297 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHRNA3P32297 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHRNA3P32297 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CHRNA3P32297 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms