Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 AP006294.2-201ENST00000641667 209 ntBASIC17.28■□□□□ 0.36
H3F3AP84243 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
H3F3AP84243 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC17.28■□□□□ 0.36
H3F3AP84243 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
H3F3AP84243 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
H3F3AP84243 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
H3F3AP84243 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
H3F3AP84243 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
H3F3AP84243 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
H3F3AP84243 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
H3F3AP84243 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
H3F3AP84243 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
H3F3AP84243 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC17.28■□□□□ 0.36
H3F3AP84243 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
H3F3AP84243 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC17.27■□□□□ 0.36
H3F3AP84243 LINC01465-201ENST00000408887 1940 ntBASIC17.27■□□□□ 0.36
H3F3AP84243 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
H3F3AP84243 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
H3F3AP84243 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
H3F3AP84243 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
H3F3AP84243 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC17.27■□□□□ 0.36
H3F3AP84243 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
H3F3AP84243 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC17.27■□□□□ 0.36
H3F3AP84243 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
H3F3AP84243 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC17.27■□□□□ 0.36
H3F3AP84243 SAPCD2P4-201ENST00000424595 1171 ntBASIC17.27■□□□□ 0.36
H3F3AP84243 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
H3F3AP84243 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
H3F3AP84243 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
H3F3AP84243 GLRB-205ENST00000512619 728 ntTSL 3 BASIC17.27■□□□□ 0.36
H3F3AP84243 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC17.27■□□□□ 0.36
H3F3AP84243 RPS15-203ENST00000586096 570 ntTSL 2 BASIC17.27■□□□□ 0.36
H3F3AP84243 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
H3F3AP84243 AP001412.1-201ENST00000608405 714 ntBASIC17.27■□□□□ 0.36
H3F3AP84243 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC17.27■□□□□ 0.36
H3F3AP84243 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC17.27■□□□□ 0.36
H3F3AP84243 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC17.27■□□□□ 0.36
H3F3AP84243 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
H3F3AP84243 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
H3F3AP84243 KRT16P1-201ENST00000399124 1418 ntBASIC17.27■□□□□ 0.35
H3F3AP84243 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.35
H3F3AP84243 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC17.27■□□□□ 0.35
H3F3AP84243 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
H3F3AP84243 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
H3F3AP84243 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.35
H3F3AP84243 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
H3F3AP84243 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC17.26■□□□□ 0.35
H3F3AP84243 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
H3F3AP84243 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC17.26■□□□□ 0.35
H3F3AP84243 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC17.26■□□□□ 0.35
H3F3AP84243 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
H3F3AP84243 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC17.26■□□□□ 0.35
H3F3AP84243 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC17.26■□□□□ 0.35
H3F3AP84243 AC004980.1-204ENST00000429707 299 ntBASIC17.26■□□□□ 0.35
H3F3AP84243 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC17.26■□□□□ 0.35
H3F3AP84243 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
H3F3AP84243 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC17.26■□□□□ 0.35
H3F3AP84243 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
H3F3AP84243 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
H3F3AP84243 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC17.26■□□□□ 0.35
H3F3AP84243 SDHAP1-207ENST00000440850 2000 ntBASIC17.26■□□□□ 0.35
H3F3AP84243 AC005332.7-201ENST00000614046 2005 ntBASIC17.26■□□□□ 0.35
H3F3AP84243 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
H3F3AP84243 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC17.26■□□□□ 0.35
H3F3AP84243 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
H3F3AP84243 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
H3F3AP84243 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC17.25■□□□□ 0.35
H3F3AP84243 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
H3F3AP84243 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
H3F3AP84243 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC17.25■□□□□ 0.35
H3F3AP84243 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
H3F3AP84243 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC17.25■□□□□ 0.35
H3F3AP84243 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
H3F3AP84243 AC116562.4-201ENST00000641316 2276 ntBASIC17.25■□□□□ 0.35
H3F3AP84243 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
H3F3AP84243 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
H3F3AP84243 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
H3F3AP84243 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
H3F3AP84243 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC17.25■□□□□ 0.35
H3F3AP84243 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
H3F3AP84243 AC131212.4-201ENST00000623606 975 ntBASIC17.25■□□□□ 0.35
H3F3AP84243 AL049637.2-201ENST00000641778 930 ntBASIC17.25■□□□□ 0.35
H3F3AP84243 AC007952.6-201ENST00000573168 2673 ntBASIC17.25■□□□□ 0.35
H3F3AP84243 AC003957.1-201ENST00000625108 2673 ntBASIC17.25■□□□□ 0.35
H3F3AP84243 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC17.25■□□□□ 0.35
H3F3AP84243 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
H3F3AP84243 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC17.25■□□□□ 0.35
H3F3AP84243 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
H3F3AP84243 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
H3F3AP84243 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
H3F3AP84243 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
H3F3AP84243 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC17.25■□□□□ 0.35
H3F3AP84243 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC17.24■□□□□ 0.35
H3F3AP84243 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
H3F3AP84243 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
H3F3AP84243 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC17.24■□□□□ 0.35
H3F3AP84243 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC17.24■□□□□ 0.35
H3F3AP84243 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
H3F3AP84243 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
H3F3AP84243 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms