Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PKNOX1P55347 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PKNOX1P55347 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PKNOX1P55347 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PKNOX1P55347 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
PKNOX1P55347 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC18.91■□□□□ 0.62
PKNOX1P55347 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PKNOX1P55347 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC18.91■□□□□ 0.62
PKNOX1P55347 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC18.91■□□□□ 0.62
PKNOX1P55347 AC006970.2-201ENST00000450065 779 ntBASIC18.91■□□□□ 0.62
PKNOX1P55347 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
PKNOX1P55347 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PKNOX1P55347 AC091874.3-201ENST00000512672 1195 ntBASIC18.91■□□□□ 0.62
PKNOX1P55347 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC18.91■□□□□ 0.62
PKNOX1P55347 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC18.91■□□□□ 0.62
PKNOX1P55347 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
PKNOX1P55347 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PKNOX1P55347 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC18.91■□□□□ 0.62
PKNOX1P55347 AL049812.1-201ENST00000432563 2267 ntBASIC18.91■□□□□ 0.62
PKNOX1P55347 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
PKNOX1P55347 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
PKNOX1P55347 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
PKNOX1P55347 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PKNOX1P55347 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC18.91■□□□□ 0.62
PKNOX1P55347 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PKNOX1P55347 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
PKNOX1P55347 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PKNOX1P55347 AC005332.8-201ENST00000622750 2735 ntBASIC18.9■□□□□ 0.62
PKNOX1P55347 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
PKNOX1P55347 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PKNOX1P55347 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
PKNOX1P55347 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC18.9■□□□□ 0.62
PKNOX1P55347 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC18.9■□□□□ 0.62
PKNOX1P55347 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
PKNOX1P55347 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
PKNOX1P55347 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC18.9■□□□□ 0.62
PKNOX1P55347 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC18.9■□□□□ 0.62
PKNOX1P55347 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
PKNOX1P55347 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC18.9■□□□□ 0.62
PKNOX1P55347 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
PKNOX1P55347 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PKNOX1P55347 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PKNOX1P55347 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
PKNOX1P55347 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
PKNOX1P55347 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PKNOX1P55347 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
PKNOX1P55347 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
PKNOX1P55347 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
PKNOX1P55347 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC18.9■□□□□ 0.62
PKNOX1P55347 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PKNOX1P55347 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
PKNOX1P55347 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC18.9■□□□□ 0.62
PKNOX1P55347 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
PKNOX1P55347 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC18.89■□□□□ 0.62
PKNOX1P55347 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC18.89■□□□□ 0.62
PKNOX1P55347 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC18.89■□□□□ 0.62
PKNOX1P55347 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PKNOX1P55347 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PKNOX1P55347 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
PKNOX1P55347 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC18.89■□□□□ 0.61
PKNOX1P55347 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
PKNOX1P55347 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC18.89■□□□□ 0.61
PKNOX1P55347 RPS2P52-201ENST00000469610 820 ntBASIC18.89■□□□□ 0.61
PKNOX1P55347 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC18.89■□□□□ 0.61
PKNOX1P55347 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
PKNOX1P55347 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
PKNOX1P55347 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PKNOX1P55347 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
PKNOX1P55347 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
PKNOX1P55347 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC18.89■□□□□ 0.61
PKNOX1P55347 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
PKNOX1P55347 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
PKNOX1P55347 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
PKNOX1P55347 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
PKNOX1P55347 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PKNOX1P55347 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PKNOX1P55347 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
PKNOX1P55347 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.61
PKNOX1P55347 ZNF815P-204ENST00000434898 1737 ntBASIC18.88■□□□□ 0.61
PKNOX1P55347 AC104581.1-202ENST00000635932 2618 ntBASIC18.88■□□□□ 0.61
PKNOX1P55347 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC18.88■□□□□ 0.61
PKNOX1P55347 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
PKNOX1P55347 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC18.88■□□□□ 0.61
PKNOX1P55347 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PKNOX1P55347 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PKNOX1P55347 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC18.88■□□□□ 0.61
PKNOX1P55347 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
PKNOX1P55347 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PKNOX1P55347 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PKNOX1P55347 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PKNOX1P55347 SLC29A4P1-201ENST00000398760 971 ntBASIC18.88■□□□□ 0.61
PKNOX1P55347 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC18.88■□□□□ 0.61
PKNOX1P55347 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
PKNOX1P55347 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC18.88■□□□□ 0.61
PKNOX1P55347 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC18.88■□□□□ 0.61
PKNOX1P55347 AC006557.6-201ENST00000623071 864 ntBASIC18.88■□□□□ 0.61
PKNOX1P55347 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC18.88■□□□□ 0.61
PKNOX1P55347 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC18.88■□□□□ 0.61
PKNOX1P55347 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
PKNOX1P55347 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms