Protein–RNA interactions for Protein: P32297

CHRNA3, Neuronal acetylcholine receptor subunit alpha-3, humanhuman

Predictions only

Length 505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA3P32297 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CHRNA3P32297 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC20.34■□□□□ 0.85
CHRNA3P32297 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC20.34■□□□□ 0.85
CHRNA3P32297 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
CHRNA3P32297 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC20.34■□□□□ 0.85
CHRNA3P32297 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CHRNA3P32297 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CHRNA3P32297 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CHRNA3P32297 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CHRNA3P32297 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
CHRNA3P32297 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
CHRNA3P32297 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC20.33■□□□□ 0.85
CHRNA3P32297 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
CHRNA3P32297 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CHRNA3P32297 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CHRNA3P32297 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC20.33■□□□□ 0.85
CHRNA3P32297 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CHRNA3P32297 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
CHRNA3P32297 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.85
CHRNA3P32297 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC20.33■□□□□ 0.85
CHRNA3P32297 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
CHRNA3P32297 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CHRNA3P32297 RN7SL471P-201ENST00000580476 299 ntBASIC20.33■□□□□ 0.85
CHRNA3P32297 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC20.33■□□□□ 0.85
CHRNA3P32297 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC20.33■□□□□ 0.84
CHRNA3P32297 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
CHRNA3P32297 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
CHRNA3P32297 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CHRNA3P32297 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC20.33■□□□□ 0.84
CHRNA3P32297 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CHRNA3P32297 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CHRNA3P32297 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CHRNA3P32297 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC20.33■□□□□ 0.84
CHRNA3P32297 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CHRNA3P32297 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CHRNA3P32297 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CHRNA3P32297 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CHRNA3P32297 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CHRNA3P32297 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
CHRNA3P32297 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
CHRNA3P32297 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
CHRNA3P32297 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC20.32■□□□□ 0.84
CHRNA3P32297 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC20.32■□□□□ 0.84
CHRNA3P32297 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC20.32■□□□□ 0.84
CHRNA3P32297 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC20.32■□□□□ 0.84
CHRNA3P32297 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC20.32■□□□□ 0.84
CHRNA3P32297 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CHRNA3P32297 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CHRNA3P32297 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC20.32■□□□□ 0.84
CHRNA3P32297 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CHRNA3P32297 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CHRNA3P32297 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CHRNA3P32297 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC20.32■□□□□ 0.84
CHRNA3P32297 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
CHRNA3P32297 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CHRNA3P32297 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC20.31■□□□□ 0.84
CHRNA3P32297 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC20.31■□□□□ 0.84
CHRNA3P32297 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CHRNA3P32297 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC20.31■□□□□ 0.84
CHRNA3P32297 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CHRNA3P32297 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CHRNA3P32297 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CHRNA3P32297 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CHRNA3P32297 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC20.31■□□□□ 0.84
CHRNA3P32297 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CHRNA3P32297 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CHRNA3P32297 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CHRNA3P32297 THEM4-205ENST00000489410 643 ntTSL 2 BASIC20.31■□□□□ 0.84
CHRNA3P32297 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
CHRNA3P32297 DET1-205ENST00000558413 583 ntTSL 4 BASIC20.31■□□□□ 0.84
CHRNA3P32297 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC20.31■□□□□ 0.84
CHRNA3P32297 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CHRNA3P32297 AIRN-201ENST00000601203 4374 ntBASIC20.31■□□□□ 0.84
CHRNA3P32297 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
CHRNA3P32297 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
CHRNA3P32297 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHRNA3P32297 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC20.3■□□□□ 0.84
CHRNA3P32297 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
CHRNA3P32297 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC20.3■□□□□ 0.84
CHRNA3P32297 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
CHRNA3P32297 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHRNA3P32297 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC20.3■□□□□ 0.84
CHRNA3P32297 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC20.3■□□□□ 0.84
CHRNA3P32297 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHRNA3P32297 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHRNA3P32297 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CHRNA3P32297 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHRNA3P32297 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CHRNA3P32297 HES2-206ENST00000489730 730 ntTSL 2 BASIC20.3■□□□□ 0.84
CHRNA3P32297 C1QBPP2-201ENST00000528754 825 ntBASIC20.3■□□□□ 0.84
CHRNA3P32297 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHRNA3P32297 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC20.3■□□□□ 0.84
CHRNA3P32297 AL359736.2-201ENST00000621992 437 ntBASIC20.3■□□□□ 0.84
CHRNA3P32297 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHRNA3P32297 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC20.3■□□□□ 0.84
CHRNA3P32297 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC20.3■□□□□ 0.84
CHRNA3P32297 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHRNA3P32297 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
CHRNA3P32297 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHRNA3P32297 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 62.2 ms