Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
PROM1O43490 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
PROM1O43490 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
PROM1O43490 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
PROM1O43490 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
PROM1O43490 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
PROM1O43490 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
PROM1O43490 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PROM1O43490 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
PROM1O43490 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC18.33■□□□□ 0.52
PROM1O43490 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC18.33■□□□□ 0.52
PROM1O43490 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC18.33■□□□□ 0.52
PROM1O43490 AL359736.2-201ENST00000621992 437 ntBASIC18.33■□□□□ 0.52
PROM1O43490 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
PROM1O43490 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC18.33■□□□□ 0.52
PROM1O43490 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
PROM1O43490 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
PROM1O43490 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PROM1O43490 AC018445.3-201ENST00000624177 1945 ntBASIC18.33■□□□□ 0.52
PROM1O43490 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PROM1O43490 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
PROM1O43490 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
PROM1O43490 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC18.32■□□□□ 0.52
PROM1O43490 AC104417.2-201ENST00000562989 1793 ntBASIC18.32■□□□□ 0.52
PROM1O43490 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
PROM1O43490 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC18.32■□□□□ 0.52
PROM1O43490 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC18.32■□□□□ 0.52
PROM1O43490 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PROM1O43490 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
PROM1O43490 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PROM1O43490 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.32■□□□□ 0.52
PROM1O43490 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
PROM1O43490 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PROM1O43490 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC18.32■□□□□ 0.52
PROM1O43490 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC18.32■□□□□ 0.52
PROM1O43490 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.32■□□□□ 0.52
PROM1O43490 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
PROM1O43490 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.32■□□□□ 0.52
PROM1O43490 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC18.32■□□□□ 0.52
PROM1O43490 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC18.32■□□□□ 0.52
PROM1O43490 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC18.32■□□□□ 0.52
PROM1O43490 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC18.32■□□□□ 0.52
PROM1O43490 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC18.32■□□□□ 0.52
PROM1O43490 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC18.32■□□□□ 0.52
PROM1O43490 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
PROM1O43490 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC18.31■□□□□ 0.52
PROM1O43490 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PROM1O43490 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC18.31■□□□□ 0.52
PROM1O43490 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC18.31■□□□□ 0.52
PROM1O43490 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC18.31■□□□□ 0.52
PROM1O43490 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PROM1O43490 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
PROM1O43490 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PROM1O43490 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC18.31■□□□□ 0.52
PROM1O43490 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC18.31■□□□□ 0.52
PROM1O43490 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC18.31■□□□□ 0.52
PROM1O43490 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PROM1O43490 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PROM1O43490 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
PROM1O43490 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC18.31■□□□□ 0.52
PROM1O43490 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC18.31■□□□□ 0.52
PROM1O43490 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC18.31■□□□□ 0.52
PROM1O43490 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC18.31■□□□□ 0.52
PROM1O43490 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC18.31■□□□□ 0.52
PROM1O43490 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
PROM1O43490 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PROM1O43490 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PROM1O43490 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PROM1O43490 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
PROM1O43490 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC18.31■□□□□ 0.52
PROM1O43490 AL032819.2-201ENST00000624543 2162 ntBASIC18.31■□□□□ 0.52
PROM1O43490 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PROM1O43490 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC18.31■□□□□ 0.52
PROM1O43490 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC18.31■□□□□ 0.52
PROM1O43490 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PROM1O43490 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
PROM1O43490 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PROM1O43490 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
PROM1O43490 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PROM1O43490 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PROM1O43490 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC18.3■□□□□ 0.52
PROM1O43490 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
PROM1O43490 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC18.3■□□□□ 0.52
PROM1O43490 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PROM1O43490 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PROM1O43490 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PROM1O43490 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC18.3■□□□□ 0.52
PROM1O43490 CABP2-204ENST00000636477 941 ntTSL 5 BASIC18.3■□□□□ 0.52
PROM1O43490 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
PROM1O43490 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PROM1O43490 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PROM1O43490 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC18.3■□□□□ 0.52
PROM1O43490 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC18.3■□□□□ 0.52
PROM1O43490 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PROM1O43490 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC18.3■□□□□ 0.52
PROM1O43490 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PROM1O43490 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PROM1O43490 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
PROM1O43490 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC18.29■□□□□ 0.52
PROM1O43490 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms