Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
MSH5O43196 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
MSH5O43196 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
MSH5O43196 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC26.07■■□□□ 1.76
MSH5O43196 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC26.07■■□□□ 1.76
MSH5O43196 AC034187.1-201ENST00000437047 561 ntTSL 4 BASIC26.07■■□□□ 1.76
MSH5O43196 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC26.07■■□□□ 1.76
MSH5O43196 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC26.07■■□□□ 1.76
MSH5O43196 AC009268.1-201ENST00000561352 1203 ntBASIC26.07■■□□□ 1.76
MSH5O43196 P4HB-223ENST00000576390 439 ntTSL 4 BASIC26.07■■□□□ 1.76
MSH5O43196 AF186192.3-201ENST00000583427 947 ntBASIC26.07■■□□□ 1.76
MSH5O43196 AC145285.6-201ENST00000604632 637 ntBASIC26.07■■□□□ 1.76
MSH5O43196 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC26.07■■□□□ 1.76
MSH5O43196 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
MSH5O43196 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
MSH5O43196 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
MSH5O43196 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
MSH5O43196 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC26.07■■□□□ 1.76
MSH5O43196 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC26.07■■□□□ 1.76
MSH5O43196 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC26.06■■□□□ 1.76
MSH5O43196 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC26.06■■□□□ 1.76
MSH5O43196 DYM-203ENST00000442713 2147 ntTSL 2 BASIC26.06■■□□□ 1.76
MSH5O43196 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC26.06■■□□□ 1.76
MSH5O43196 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC26.06■■□□□ 1.76
MSH5O43196 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC26.06■■□□□ 1.76
MSH5O43196 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC26.06■■□□□ 1.76
MSH5O43196 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
MSH5O43196 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
MSH5O43196 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC26.06■■□□□ 1.76
MSH5O43196 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
MSH5O43196 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC26.06■■□□□ 1.76
MSH5O43196 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC26.06■■□□□ 1.76
MSH5O43196 NME3-204ENST00000563498 920 ntTSL 2 BASIC26.06■■□□□ 1.76
MSH5O43196 AC005014.3-201ENST00000605985 190 ntBASIC26.06■■□□□ 1.76
MSH5O43196 DECR2-212ENST00000627716 352 ntTSL 2 BASIC26.06■■□□□ 1.76
MSH5O43196 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC26.06■■□□□ 1.76
MSH5O43196 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
MSH5O43196 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
MSH5O43196 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
MSH5O43196 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC26.06■■□□□ 1.76
MSH5O43196 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC26.06■■□□□ 1.76
MSH5O43196 AL117378.2-201ENST00000622916 1337 ntBASIC26.06■■□□□ 1.76
MSH5O43196 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC26.06■■□□□ 1.76
MSH5O43196 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
MSH5O43196 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC26.06■■□□□ 1.76
MSH5O43196 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
MSH5O43196 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
MSH5O43196 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
MSH5O43196 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC26.05■■□□□ 1.76
MSH5O43196 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
MSH5O43196 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
MSH5O43196 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
MSH5O43196 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
MSH5O43196 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
MSH5O43196 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC26.05■■□□□ 1.76
MSH5O43196 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC26.05■■□□□ 1.76
MSH5O43196 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
MSH5O43196 CRAT-202ENST00000393384 973 ntTSL 2 BASIC26.05■■□□□ 1.76
MSH5O43196 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC26.05■■□□□ 1.76
MSH5O43196 OLA1-206ENST00000428402 1270 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
MSH5O43196 GTPBP8-204ENST00000467752 686 ntTSL 5 BASIC26.05■■□□□ 1.76
MSH5O43196 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
MSH5O43196 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC26.05■■□□□ 1.76
MSH5O43196 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC26.05■■□□□ 1.76
MSH5O43196 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC26.05■■□□□ 1.76
MSH5O43196 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC26.05■■□□□ 1.76
MSH5O43196 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC26.05■■□□□ 1.76
MSH5O43196 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC26.05■■□□□ 1.76
MSH5O43196 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
MSH5O43196 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC26.05■■□□□ 1.76
MSH5O43196 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
MSH5O43196 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
MSH5O43196 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
MSH5O43196 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
MSH5O43196 KRT8P9-201ENST00000558927 1449 ntBASIC26.05■■□□□ 1.76
MSH5O43196 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC26.05■■□□□ 1.76
MSH5O43196 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC26.05■■□□□ 1.76
MSH5O43196 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
MSH5O43196 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
MSH5O43196 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC26.04■■□□□ 1.76
MSH5O43196 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC26.04■■□□□ 1.76
MSH5O43196 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC26.04■■□□□ 1.76
MSH5O43196 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
MSH5O43196 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC26.04■■□□□ 1.76
MSH5O43196 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC26.04■■□□□ 1.76
MSH5O43196 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC26.04■■□□□ 1.76
MSH5O43196 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC26.04■■□□□ 1.76
MSH5O43196 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC26.04■■□□□ 1.76
MSH5O43196 AC067773.1-201ENST00000603284 1094 ntBASIC26.04■■□□□ 1.76
MSH5O43196 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC26.04■■□□□ 1.76
MSH5O43196 NARF-205ENST00000412079 1760 ntTSL 5 BASIC26.04■■□□□ 1.76
MSH5O43196 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
MSH5O43196 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC26.04■■□□□ 1.76
MSH5O43196 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC26.04■■□□□ 1.76
MSH5O43196 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
MSH5O43196 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC26.04■■□□□ 1.76
MSH5O43196 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC26.03■■□□□ 1.76
MSH5O43196 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC26.03■■□□□ 1.76
MSH5O43196 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC26.03■■□□□ 1.76
MSH5O43196 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC26.03■■□□□ 1.76
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms