Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC18.34■□□□□ 0.53
SCN3AQ9NY46 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
SCN3AQ9NY46 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC18.34■□□□□ 0.53
SCN3AQ9NY46 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SCN3AQ9NY46 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
SCN3AQ9NY46 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SCN3AQ9NY46 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
SCN3AQ9NY46 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
SCN3AQ9NY46 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SCN3AQ9NY46 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC18.33■□□□□ 0.53
SCN3AQ9NY46 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SCN3AQ9NY46 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC18.33■□□□□ 0.53
SCN3AQ9NY46 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC18.33■□□□□ 0.53
SCN3AQ9NY46 AP001412.1-201ENST00000608405 714 ntBASIC18.33■□□□□ 0.53
SCN3AQ9NY46 AL445675.2-201ENST00000620291 557 ntBASIC18.33■□□□□ 0.53
SCN3AQ9NY46 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
SCN3AQ9NY46 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
SCN3AQ9NY46 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
SCN3AQ9NY46 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
SCN3AQ9NY46 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SCN3AQ9NY46 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC18.33■□□□□ 0.52
SCN3AQ9NY46 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
SCN3AQ9NY46 PPP1R14BP5-201ENST00000440334 435 ntBASIC18.33■□□□□ 0.52
SCN3AQ9NY46 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC18.33■□□□□ 0.52
SCN3AQ9NY46 AP003071.4-201ENST00000562276 1284 ntBASIC18.33■□□□□ 0.52
SCN3AQ9NY46 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC18.33■□□□□ 0.52
SCN3AQ9NY46 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
SCN3AQ9NY46 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
SCN3AQ9NY46 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
SCN3AQ9NY46 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
SCN3AQ9NY46 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SCN3AQ9NY46 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SCN3AQ9NY46 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SCN3AQ9NY46 AC116562.4-201ENST00000641316 2276 ntBASIC18.32■□□□□ 0.52
SCN3AQ9NY46 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC18.32■□□□□ 0.52
SCN3AQ9NY46 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SCN3AQ9NY46 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC18.32■□□□□ 0.52
SCN3AQ9NY46 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SCN3AQ9NY46 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SCN3AQ9NY46 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
SCN3AQ9NY46 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC18.32■□□□□ 0.52
SCN3AQ9NY46 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
SCN3AQ9NY46 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
SCN3AQ9NY46 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC18.32■□□□□ 0.52
SCN3AQ9NY46 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC18.32■□□□□ 0.52
SCN3AQ9NY46 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC18.32■□□□□ 0.52
SCN3AQ9NY46 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC18.32■□□□□ 0.52
SCN3AQ9NY46 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SCN3AQ9NY46 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
SCN3AQ9NY46 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
SCN3AQ9NY46 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
SCN3AQ9NY46 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SCN3AQ9NY46 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
SCN3AQ9NY46 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SCN3AQ9NY46 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC18.32■□□□□ 0.52
SCN3AQ9NY46 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC18.32■□□□□ 0.52
SCN3AQ9NY46 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SCN3AQ9NY46 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SCN3AQ9NY46 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC18.32■□□□□ 0.52
SCN3AQ9NY46 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SCN3AQ9NY46 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SCN3AQ9NY46 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
SCN3AQ9NY46 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC18.32■□□□□ 0.52
SCN3AQ9NY46 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
SCN3AQ9NY46 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
SCN3AQ9NY46 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SCN3AQ9NY46 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SCN3AQ9NY46 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
SCN3AQ9NY46 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC18.31■□□□□ 0.52
SCN3AQ9NY46 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SCN3AQ9NY46 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SCN3AQ9NY46 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
SCN3AQ9NY46 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SCN3AQ9NY46 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SCN3AQ9NY46 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SCN3AQ9NY46 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SCN3AQ9NY46 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC18.31■□□□□ 0.52
SCN3AQ9NY46 NME1-207ENST00000480143 964 ntTSL 2 BASIC18.31■□□□□ 0.52
SCN3AQ9NY46 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC18.31■□□□□ 0.52
SCN3AQ9NY46 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC18.31■□□□□ 0.52
SCN3AQ9NY46 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC18.31■□□□□ 0.52
SCN3AQ9NY46 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC18.31■□□□□ 0.52
SCN3AQ9NY46 MIR6786-201ENST00000616843 113 ntBASIC18.31■□□□□ 0.52
SCN3AQ9NY46 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SCN3AQ9NY46 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SCN3AQ9NY46 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC18.31■□□□□ 0.52
SCN3AQ9NY46 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC18.31■□□□□ 0.52
SCN3AQ9NY46 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SCN3AQ9NY46 ADM-207ENST00000530439 1839 ntTSL 2 BASIC18.31■□□□□ 0.52
SCN3AQ9NY46 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SCN3AQ9NY46 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SCN3AQ9NY46 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC18.31■□□□□ 0.52
SCN3AQ9NY46 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
SCN3AQ9NY46 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SCN3AQ9NY46 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SCN3AQ9NY46 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SCN3AQ9NY46 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC18.3■□□□□ 0.52
SCN3AQ9NY46 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
SCN3AQ9NY46 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
SCN3AQ9NY46 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms