Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 PDAP1-202ENST00000426447 767 ntTSL 522.65■■□□□ 1.221e-10■■■■□ 20.8
UPF1Q92900 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC22.03■■□□□ 1.121e-10■■■■□ 20.8
UPF1Q92900 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC21.61■■□□□ 1.051e-10■■■■□ 20.8
UPF1Q92900 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC21.55■■□□□ 1.041e-10■■■■□ 20.8
UPF1Q92900 PPP2R5D-203ENST00000461010 1558 ntAPPRIS ALT1 TSL 1 (best) BASIC12.33□□□□□ -0.441e-10■■■■□ 20.8
UPF1Q92900 AC092073.1-202ENST00000606020 653 ntTSL 3 BASIC19.89■□□□□ 0.775e-8■■■■□ 20.8
UPF1Q92900 TCF3-211ENST00000587425 629 ntTSL 222.55■■□□□ 1.21e-8■■■■□ 20.8
UPF1Q92900 PML-216ENST00000566068 834 ntTSL 318.97■□□□□ 0.633e-6■■■■□ 20.8
UPF1Q92900 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.323e-6■■■■□ 20.8
UPF1Q92900 NAV1-201ENST00000367295 11645 ntTSL 1 (best) BASIC6.24□□□□□ -1.413e-6■■■■□ 20.8
UPF1Q92900 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC17.53■□□□□ 0.46e-8■■■■□ 20.8
UPF1Q92900 PIK3IP1-206ENST00000493034 2684 ntTSL 216.25■□□□□ 0.196e-8■■■■□ 20.8
UPF1Q92900 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.136e-8■■■■□ 20.8
UPF1Q92900 PIK3IP1-205ENST00000480654 3030 ntTSL 212.99□□□□□ -0.336e-8■■■■□ 20.8
UPF1Q92900 C2orf88-201ENST00000340623 4035 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.237e-7■■■■□ 20.8
UPF1Q92900 SRP9-205ENST00000626563 329 ntTSL 5 BASIC17.51■□□□□ 0.398e-9■■■■□ 20.7
UPF1Q92900 SRP9-202ENST00000366838 540 ntTSL 2 BASIC14.9□□□□□ -0.028e-9■■■■□ 20.7
UPF1Q92900 GNAI2-205ENST00000441156 2168 ntTSL 228.24■■■□□ 2.111e-7■■■■□ 20.7
UPF1Q92900 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.071e-7■■■■□ 20.7
UPF1Q92900 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC17.99■□□□□ 0.471e-7■■■■□ 20.7
UPF1Q92900 GNAI2-211ENST00000491100 3886 ntTSL 210.51□□□□□ -0.731e-7■■■■□ 20.7
UPF1Q92900 MXD4-203ENST00000513372 4228 ntTSL 213.66□□□□□ -0.221e-12■■■■□ 20.7
UPF1Q92900 METTL6-206ENST00000458728 564 ntTSL 311.78□□□□□ -0.522e-6■■■■□ 20.7
UPF1Q92900 METTL6-203ENST00000443029 4020 ntAPPRIS P1 TSL 5 BASIC7.63□□□□□ -1.192e-6■■■■□ 20.7
UPF1Q92900 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.673e-14■■■■□ 20.7
UPF1Q92900 PPM1G-202ENST00000472077 3752 ntTSL 29.31□□□□□ -0.923e-14■■■■□ 20.7
UPF1Q92900 STK40-206ENST00000460417 681 ntTSL 220.96■□□□□ 0.958e-8■■■■□ 20.7
UPF1Q92900 STK40-207ENST00000473733 629 ntTSL 316.51■□□□□ 0.238e-8■■■■□ 20.7
UPF1Q92900 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC14.51□□□□□ -0.097e-7■■■■□ 20.7
UPF1Q92900 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.17e-7■■■■□ 20.7
UPF1Q92900 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC14.35□□□□□ -0.117e-7■■■■□ 20.7
UPF1Q92900 CYB561-202ENST00000392975 3007 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.367e-7■■■■□ 20.7
UPF1Q92900 BCAT1-204ENST00000538118 4694 ntAPPRIS ALT2 TSL 1 (best) BASIC10.2□□□□□ -0.782e-18■■■■□ 20.7
UPF1Q92900 BCAT1-202ENST00000342945 4319 ntTSL 2 BASIC7.98□□□□□ -1.132e-18■■■■□ 20.7
UPF1Q92900 ARRDC3-201ENST00000265138 4188 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.315e-10■■■■□ 20.7
UPF1Q92900 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.163e-8■■■■□ 20.7
UPF1Q92900 ALDH1A2-204ENST00000537372 3700 ntTSL 2 BASIC14.67□□□□□ -0.063e-8■■■■□ 20.7
UPF1Q92900 ALDH1A2-202ENST00000347587 3297 ntTSL 1 (best) BASIC10.96□□□□□ -0.653e-8■■■■□ 20.7
UPF1Q92900 ALDH1A2-221ENST00000560312 3146 ntTSL 1 (best)8.56□□□□□ -1.043e-8■■■■□ 20.7
UPF1Q92900 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC29.14■■■□□ 2.251e-7■■■■□ 20.7
UPF1Q92900 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.791e-7■■■■□ 20.7
UPF1Q92900 MBOAT7-206ENST00000437868 2033 ntTSL 1 (best)22.75■■□□□ 1.231e-7■■■■□ 20.7
UPF1Q92900 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC22.58■■□□□ 1.211e-7■■■■□ 20.7
UPF1Q92900 MBOAT7-212ENST00000494142 3039 ntTSL 1 (best)16.63■□□□□ 0.251e-7■■■■□ 20.7
UPF1Q92900 RHOT2-212ENST00000564659 854 ntTSL 224.24■■□□□ 1.472e-7■■■■□ 20.7
UPF1Q92900 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.651e-7■■■■□ 20.7
UPF1Q92900 RHOT2-222ENST00000569675 2559 ntTSL 218.69■□□□□ 0.581e-7■■■■□ 20.7
UPF1Q92900 RHOT2-220ENST00000569197 530 ntTSL 518.66■□□□□ 0.581e-7■■■■□ 20.7
UPF1Q92900 RHOT2-218ENST00000568636 3098 ntTSL 216■□□□□ 0.151e-7■■■■□ 20.7
UPF1Q92900 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC33.26■■■□□ 2.913e-8■■■■□ 20.7
UPF1Q92900 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.613e-8■■■■□ 20.7
UPF1Q92900 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC25.4■■□□□ 1.663e-8■■■■□ 20.7
UPF1Q92900 EIF6-205ENST00000440766 798 ntTSL 223.47■■□□□ 1.353e-8■■■■□ 20.7
UPF1Q92900 EIF6-206ENST00000447927 932 ntTSL 1 (best)23.47■■□□□ 1.353e-8■■■■□ 20.7
UPF1Q92900 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC22.94■■□□□ 1.263e-8■■■■□ 20.7
UPF1Q92900 PSMD3-204ENST00000540504 458 ntTSL 324.5■■□□□ 1.512e-11■■■■□ 20.7
UPF1Q92900 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.062e-11■■■■□ 20.7
UPF1Q92900 TF-201ENST00000402696 2968 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.34e-7■■■■□ 20.7
UPF1Q92900 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.822e-7■■■■□ 20.7
UPF1Q92900 SLC50A1-208ENST00000484027 596 ntTSL 317.17■□□□□ 0.341e-35■■■■□ 20.7
UPF1Q92900 TK2-218ENST00000567357 2266 ntTSL 1 (best)23.43■■□□□ 1.343e-6■■■■□ 20.7
UPF1Q92900 AC010542.3-201ENST00000561527 586 ntTSL 421.12■□□□□ 0.973e-6■■■■□ 20.7
UPF1Q92900 AC010542.3-202ENST00000561728 701 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.333e-6■■■■□ 20.7
UPF1Q92900 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.283e-6■■■■□ 20.7
UPF1Q92900 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.273e-6■■■■□ 20.7
UPF1Q92900 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.123e-6■■■■□ 20.7
UPF1Q92900 TK2-205ENST00000527284 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.013e-6■■■■□ 20.7
UPF1Q92900 TK2-209ENST00000561905 822 ntTSL 514.38□□□□□ -0.113e-6■■■■□ 20.7
UPF1Q92900 TK2-221ENST00000620035 5060 ntTSL 2 BASIC14.32□□□□□ -0.123e-6■■■■□ 20.7
UPF1Q92900 TK2-206ENST00000527800 2687 ntTSL 1 (best) BASIC11.3□□□□□ -0.63e-6■■■■□ 20.7
UPF1Q92900 NDST1-203ENST00000518346 496 ntTSL 320.72■□□□□ 0.918e-13■■■■□ 20.7
UPF1Q92900 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC15.64■□□□□ 0.098e-7■■■■□ 20.7
UPF1Q92900 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC15.46■□□□□ 0.068e-7■■■■□ 20.7
UPF1Q92900 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC15.09■□□□□ 0.018e-7■■■■□ 20.7
UPF1Q92900 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.274e-8■■■■□ 20.6
UPF1Q92900 MLXIP-208ENST00000538698 5097 ntTSL 1 (best) BASIC13.65□□□□□ -0.226e-8■■■■□ 20.6
UPF1Q92900 PDCD6IPP2-204ENST00000564604 559 ntTSL 430.16■■■□□ 2.423e-6■■■■□ 20.6
UPF1Q92900 PSD4-207ENST00000464559 2424 ntTSL 223.62■■□□□ 1.376e-8■■■■□ 20.6
UPF1Q92900 CARM1-210ENST00000592516 696 ntTSL 318.65■□□□□ 0.581e-9■■■■□ 20.6
UPF1Q92900 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.251e-9■■■■□ 20.6
UPF1Q92900 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.26e-8■■■■□ 20.6
UPF1Q92900 PDCD6IPP2-206ENST00000566178 3351 ntTSL 5 BASIC15.89■□□□□ 0.133e-6■■■■□ 20.6
UPF1Q92900 PSD4-206ENST00000460725 2763 ntTSL 214.56□□□□□ -0.086e-8■■■■□ 20.6
UPF1Q92900 PSD4-204ENST00000418251 5600 ntTSL 514.08□□□□□ -0.166e-8■■■■□ 20.6
UPF1Q92900 DUSP11-205ENST00000480948 787 ntTSL 510.67□□□□□ -0.71e-9■■■■□ 20.6
UPF1Q92900 PSD4-205ENST00000441564 11234 ntAPPRIS ALT2 TSL 1 (best) BASIC10.01□□□□□ -0.816e-8■■■■□ 20.6
UPF1Q92900 FADS2-208ENST00000521571 799 ntTSL 39□□□□□ -0.971e-9■■■■□ 20.6
UPF1Q92900 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC36.55■■■■□ 3.445e-6■■■■□ 20.6
UPF1Q92900 CDK16-216ENST00000520893 943 ntTSL 529.08■■■□□ 2.255e-6■■■■□ 20.6
UPF1Q92900 CDK16-208ENST00000517426 1574 ntTSL 527.39■■□□□ 1.975e-6■■■■□ 20.6
UPF1Q92900 PHF20-207ENST00000461122 919 ntTSL 327.38■■□□□ 1.975e-6■■■■□ 20.6
UPF1Q92900 CDK16-213ENST00000519758 991 ntTSL 324.88■■□□□ 1.575e-6■■■■□ 20.6
UPF1Q92900 CDK16-217ENST00000522234 1679 ntTSL 223.95■■□□□ 1.435e-6■■■■□ 20.6
UPF1Q92900 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC23.56■■□□□ 1.361e-6■■■■□ 20.6
UPF1Q92900 CDK16-215ENST00000520295 573 ntTSL 421.99■■□□□ 1.115e-6■■■■□ 20.6
UPF1Q92900 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.043e-8■■■■□ 20.6
UPF1Q92900 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC21.26■□□□□ 0.995e-6■■■■□ 20.6
UPF1Q92900 PHF20-206ENST00000452270 832 ntTSL 521.25■□□□□ 0.995e-6■■■■□ 20.6
UPF1Q92900 CDK16-209ENST00000517479 520 ntTSL 420.85■□□□□ 0.935e-6■■■■□ 20.6
UPF1Q92900 MAPK3-204ENST00000395200 997 ntTSL 3 BASIC19.58■□□□□ 0.725e-6■■■■□ 20.6
Retrieved 100 of 15,879 protein–RNA pairs in 157.1 ms