Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC17.7■□□□□ 0.42
CDH11P55287 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
CDH11P55287 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CDH11P55287 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CDH11P55287 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CDH11P55287 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC17.7■□□□□ 0.42
CDH11P55287 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC17.69■□□□□ 0.42
CDH11P55287 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC17.69■□□□□ 0.42
CDH11P55287 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
CDH11P55287 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CDH11P55287 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
CDH11P55287 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
CDH11P55287 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC17.69■□□□□ 0.42
CDH11P55287 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
CDH11P55287 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CDH11P55287 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CDH11P55287 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CDH11P55287 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
CDH11P55287 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CDH11P55287 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CDH11P55287 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CDH11P55287 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CDH11P55287 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC17.69■□□□□ 0.42
CDH11P55287 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC17.69■□□□□ 0.42
CDH11P55287 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC17.69■□□□□ 0.42
CDH11P55287 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC17.69■□□□□ 0.42
CDH11P55287 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC17.69■□□□□ 0.42
CDH11P55287 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC17.69■□□□□ 0.42
CDH11P55287 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
CDH11P55287 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CDH11P55287 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CDH11P55287 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CDH11P55287 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CDH11P55287 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CDH11P55287 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CDH11P55287 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CDH11P55287 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC17.69■□□□□ 0.42
CDH11P55287 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
CDH11P55287 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CDH11P55287 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CDH11P55287 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CDH11P55287 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC17.68■□□□□ 0.42
CDH11P55287 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
CDH11P55287 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CDH11P55287 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC17.68■□□□□ 0.42
CDH11P55287 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
CDH11P55287 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CDH11P55287 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
CDH11P55287 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CDH11P55287 PRORSD1P-201ENST00000295112 541 ntBASIC17.68■□□□□ 0.42
CDH11P55287 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CDH11P55287 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CDH11P55287 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
CDH11P55287 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC17.68■□□□□ 0.42
CDH11P55287 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC17.68■□□□□ 0.42
CDH11P55287 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CDH11P55287 UNC93B5-201ENST00000530315 699 ntBASIC17.68■□□□□ 0.42
CDH11P55287 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CDH11P55287 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
CDH11P55287 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC17.68■□□□□ 0.42
CDH11P55287 AC008687.6-201ENST00000596318 630 ntBASIC17.68■□□□□ 0.42
CDH11P55287 AC006058.3-201ENST00000606217 1069 ntBASIC17.68■□□□□ 0.42
CDH11P55287 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CDH11P55287 AC105020.6-201ENST00000621523 1217 ntBASIC17.68■□□□□ 0.42
CDH11P55287 AC066615.1-201ENST00000640911 628 ntBASIC17.68■□□□□ 0.42
CDH11P55287 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
CDH11P55287 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CDH11P55287 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
CDH11P55287 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CDH11P55287 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
CDH11P55287 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CDH11P55287 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
CDH11P55287 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
CDH11P55287 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC17.68■□□□□ 0.42
CDH11P55287 NEFHP1-201ENST00000412845 2629 ntBASIC17.68■□□□□ 0.42
CDH11P55287 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
CDH11P55287 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CDH11P55287 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CDH11P55287 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CDH11P55287 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CDH11P55287 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CDH11P55287 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
CDH11P55287 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CDH11P55287 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC17.67■□□□□ 0.42
CDH11P55287 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CDH11P55287 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CDH11P55287 HLA-G-202ENST00000376815 851 ntBASIC17.67■□□□□ 0.42
CDH11P55287 HLA-G-203ENST00000376818 1127 ntBASIC17.67■□□□□ 0.42
CDH11P55287 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
CDH11P55287 ADM-205ENST00000528544 586 ntTSL 2 BASIC17.67■□□□□ 0.42
CDH11P55287 AP003097.1-201ENST00000530657 1135 ntBASIC17.67■□□□□ 0.42
CDH11P55287 MMAB-206ENST00000540016 945 ntTSL 3 BASIC17.67■□□□□ 0.42
CDH11P55287 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC17.67■□□□□ 0.42
CDH11P55287 AC060766.5-201ENST00000590539 871 ntBASIC17.67■□□□□ 0.42
CDH11P55287 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC17.67■□□□□ 0.42
CDH11P55287 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CDH11P55287 HLA-B-256ENST00000639848 1089 ntBASIC17.67■□□□□ 0.42
CDH11P55287 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CDH11P55287 PHGDH-210ENST00000641115 1638 ntBASIC17.67■□□□□ 0.42
CDH11P55287 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms