Protein–RNA interactions for Protein: P31276

HOXC13, Homeobox protein Hox-C13, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC13P31276 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC20.06■□□□□ 0.8
HOXC13P31276 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HOXC13P31276 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HOXC13P31276 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC20.06■□□□□ 0.8
HOXC13P31276 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC20.06■□□□□ 0.8
HOXC13P31276 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC20.06■□□□□ 0.8
HOXC13P31276 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
HOXC13P31276 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC20.06■□□□□ 0.8
HOXC13P31276 WDR88-203ENST00000592765 651 ntTSL 5 BASIC20.06■□□□□ 0.8
HOXC13P31276 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
HOXC13P31276 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HOXC13P31276 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC20.06■□□□□ 0.8
HOXC13P31276 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC20.06■□□□□ 0.8
HOXC13P31276 ABBA01031674.1-201ENST00000635145 728 ntBASIC20.06■□□□□ 0.8
HOXC13P31276 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HOXC13P31276 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC20.06■□□□□ 0.8
HOXC13P31276 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HOXC13P31276 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC20.06■□□□□ 0.8
HOXC13P31276 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HOXC13P31276 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HOXC13P31276 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC20.05■□□□□ 0.8
HOXC13P31276 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
HOXC13P31276 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HOXC13P31276 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HOXC13P31276 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
HOXC13P31276 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HOXC13P31276 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HOXC13P31276 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HOXC13P31276 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
HOXC13P31276 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HOXC13P31276 ECEL1P2-202ENST00000465689 757 ntBASIC20.05■□□□□ 0.8
HOXC13P31276 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC20.05■□□□□ 0.8
HOXC13P31276 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC20.05■□□□□ 0.8
HOXC13P31276 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HOXC13P31276 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HOXC13P31276 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
HOXC13P31276 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HOXC13P31276 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
HOXC13P31276 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
HOXC13P31276 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC20.05■□□□□ 0.8
HOXC13P31276 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HOXC13P31276 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC20.05■□□□□ 0.8
HOXC13P31276 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC20.05■□□□□ 0.8
HOXC13P31276 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HOXC13P31276 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HOXC13P31276 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC20.04■□□□□ 0.8
HOXC13P31276 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
HOXC13P31276 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
HOXC13P31276 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HOXC13P31276 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC20.04■□□□□ 0.8
HOXC13P31276 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC20.04■□□□□ 0.8
HOXC13P31276 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC20.04■□□□□ 0.8
HOXC13P31276 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC20.04■□□□□ 0.8
HOXC13P31276 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HOXC13P31276 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
HOXC13P31276 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HOXC13P31276 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
HOXC13P31276 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
HOXC13P31276 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC20.04■□□□□ 0.8
HOXC13P31276 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HOXC13P31276 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC20.03■□□□□ 0.8
HOXC13P31276 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
HOXC13P31276 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HOXC13P31276 KRT16P1-201ENST00000399124 1418 ntBASIC20.03■□□□□ 0.8
HOXC13P31276 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HOXC13P31276 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
HOXC13P31276 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HOXC13P31276 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
HOXC13P31276 GUK1-204ENST00000366721 689 ntTSL 3 BASIC20.03■□□□□ 0.8
HOXC13P31276 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC20.03■□□□□ 0.8
HOXC13P31276 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC20.03■□□□□ 0.8
HOXC13P31276 KSR1P1-201ENST00000446298 240 ntBASIC20.03■□□□□ 0.8
HOXC13P31276 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC20.03■□□□□ 0.8
HOXC13P31276 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC20.03■□□□□ 0.8
HOXC13P31276 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC20.03■□□□□ 0.8
HOXC13P31276 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
HOXC13P31276 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC20.03■□□□□ 0.8
HOXC13P31276 AC087388.1-201ENST00000571370 1112 ntBASIC20.03■□□□□ 0.8
HOXC13P31276 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC20.03■□□□□ 0.8
HOXC13P31276 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC20.03■□□□□ 0.8
HOXC13P31276 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC20.03■□□□□ 0.8
HOXC13P31276 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
HOXC13P31276 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HOXC13P31276 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HOXC13P31276 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC20.03■□□□□ 0.8
HOXC13P31276 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
HOXC13P31276 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HOXC13P31276 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HOXC13P31276 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
HOXC13P31276 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HOXC13P31276 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
HOXC13P31276 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HOXC13P31276 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
HOXC13P31276 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC20.02■□□□□ 0.8
HOXC13P31276 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
HOXC13P31276 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC20.02■□□□□ 0.8
HOXC13P31276 HLA-A-209ENST00000638375 975 ntBASIC20.02■□□□□ 0.8
HOXC13P31276 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC20.02■□□□□ 0.8
HOXC13P31276 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC20.02■□□□□ 0.8
HOXC13P31276 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms