Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC18.65■□□□□ 0.58
LDLRP01130 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC18.65■□□□□ 0.58
LDLRP01130 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC18.65■□□□□ 0.58
LDLRP01130 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC18.65■□□□□ 0.58
LDLRP01130 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC18.65■□□□□ 0.58
LDLRP01130 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
LDLRP01130 AC243732.1-201ENST00000612648 864 ntBASIC18.65■□□□□ 0.58
LDLRP01130 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LDLRP01130 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LDLRP01130 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
LDLRP01130 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LDLRP01130 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC18.65■□□□□ 0.58
LDLRP01130 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC18.65■□□□□ 0.58
LDLRP01130 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC18.65■□□□□ 0.58
LDLRP01130 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LDLRP01130 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LDLRP01130 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LDLRP01130 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC18.65■□□□□ 0.58
LDLRP01130 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LDLRP01130 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
LDLRP01130 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
LDLRP01130 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
LDLRP01130 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.58
LDLRP01130 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.58
LDLRP01130 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC18.64■□□□□ 0.58
LDLRP01130 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.58
LDLRP01130 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LDLRP01130 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC18.64■□□□□ 0.57
LDLRP01130 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LDLRP01130 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC18.64■□□□□ 0.57
LDLRP01130 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
LDLRP01130 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LDLRP01130 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LDLRP01130 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC18.64■□□□□ 0.57
LDLRP01130 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC18.64■□□□□ 0.57
LDLRP01130 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC18.64■□□□□ 0.57
LDLRP01130 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC18.64■□□□□ 0.57
LDLRP01130 NME6-213ENST00000451657 871 ntTSL 2 BASIC18.64■□□□□ 0.57
LDLRP01130 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC18.64■□□□□ 0.57
LDLRP01130 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC18.64■□□□□ 0.57
LDLRP01130 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC18.64■□□□□ 0.57
LDLRP01130 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC18.64■□□□□ 0.57
LDLRP01130 SPIB-206ENST00000596074 847 ntTSL 2 BASIC18.64■□□□□ 0.57
LDLRP01130 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LDLRP01130 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
LDLRP01130 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LDLRP01130 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LDLRP01130 LINC01465-201ENST00000408887 1940 ntBASIC18.64■□□□□ 0.57
LDLRP01130 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC18.64■□□□□ 0.57
LDLRP01130 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LDLRP01130 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LDLRP01130 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LDLRP01130 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LDLRP01130 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
LDLRP01130 GOLGA2P11-201ENST00000562660 1621 ntBASIC18.63■□□□□ 0.57
LDLRP01130 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LDLRP01130 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
LDLRP01130 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC18.63■□□□□ 0.57
LDLRP01130 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC18.63■□□□□ 0.57
LDLRP01130 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LDLRP01130 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
LDLRP01130 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
LDLRP01130 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
LDLRP01130 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC18.63■□□□□ 0.57
LDLRP01130 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LDLRP01130 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LDLRP01130 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
LDLRP01130 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
LDLRP01130 KRT17P3-201ENST00000420566 1262 ntBASIC18.63■□□□□ 0.57
LDLRP01130 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC18.63■□□□□ 0.57
LDLRP01130 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
LDLRP01130 RN7SL471P-201ENST00000580476 299 ntBASIC18.63■□□□□ 0.57
LDLRP01130 AL032819.2-201ENST00000624543 2162 ntBASIC18.63■□□□□ 0.57
LDLRP01130 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC18.63■□□□□ 0.57
LDLRP01130 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC18.63■□□□□ 0.57
LDLRP01130 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
LDLRP01130 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
LDLRP01130 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LDLRP01130 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LDLRP01130 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LDLRP01130 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
LDLRP01130 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LDLRP01130 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC18.62■□□□□ 0.57
LDLRP01130 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LDLRP01130 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
LDLRP01130 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LDLRP01130 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC18.62■□□□□ 0.57
LDLRP01130 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
LDLRP01130 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
LDLRP01130 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC18.62■□□□□ 0.57
LDLRP01130 KRT17P1-201ENST00000399211 1546 ntBASIC18.62■□□□□ 0.57
LDLRP01130 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
LDLRP01130 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
LDLRP01130 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LDLRP01130 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC18.62■□□□□ 0.57
LDLRP01130 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LDLRP01130 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LDLRP01130 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
LDLRP01130 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC18.62■□□□□ 0.57
LDLRP01130 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms